Analysis of interatomic Contacts of Structural Units in PDB entry:
3PBM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PBM entry

There are 2 chains in PDB entry 3PBM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 4LEU 316
B
 TYR 4VAL 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 3PBM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 10Right-handed alpha
Helix 2
2
A
18 23Right-handed 310
Helix 3
3
A
24 36Right-handed alpha
Helix 4
4
A
43 50Right-handed alpha
Helix 5
5
A
55 66Right-handed alpha
Helix 6
6
A
67 70Right-handed 310
Helix 7
7
A
72 90Right-handed alpha
Helix 8
8
A
100 106Right-handed alpha
Helix 9
9
A
110 130Right-handed alpha
Helix 10
10
A
144 156Right-handed alpha
Helix 11
11
A
157 162Right-handed 310
Helix 12
12
A
175 178Right-handed 310
Helix 13
13
A
179 189Right-handed alpha
Helix 14
14
A
202 212Right-handed alpha
Helix 15
15
A
222 226Right-handed 310
Helix 16
16
A
227 238Right-handed alpha
Helix 17
17
A
244 251Right-handed alpha
Helix 18
18
A
256 260Right-handed 310
Helix 19
19
A
261 269Right-handed alpha
Helix 20
20
A
278 283Right-handed alpha
Helix 21
21
A
285 298Right-handed alpha
Helix 22
22
A
300 314Right-handed alpha
Helix 23
23
B
4 10Right-handed alpha
Helix 24
24
B
18 23Right-handed 310
Helix 25
25
B
24 35Right-handed alpha
Helix 26
26
B
43 50Right-handed alpha
Helix 27
27
B
55 68Right-handed alpha
Helix 28
28
B
72 91Right-handed alpha
Helix 29
29
B
100 106Right-handed alpha
Helix 30
30
B
110 130Right-handed alpha
Helix 31
31
B
144 156Right-handed alpha
Helix 32
32
B
158 162Right-handed 310
Helix 33
33
B
175 178Right-handed 310
Helix 34
34
B
179 189Right-handed alpha
Helix 35
35
B
202 212Right-handed alpha
Helix 36
36
B
222 225Right-handed 310
Helix 37
37
B
227 237Right-handed alpha
Helix 38
38
B
244 251Right-handed alpha
Helix 39
39
B
256 260Right-handed 310
Helix 40
40
B
261 268Right-handed alpha
Helix 41
41
B
278 283Right-handed alpha
Helix 42
42
B
285 298Right-handed alpha
Helix 43
43
B
300 314Right-handed alpha
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There are 5 sheets in PDB entry 3PBM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
A
92 95parallel
Strand 3
A
132 133parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
136 140parallel
Strand 3
A
164 168parallel
Strand 4
A
192 193parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 197first strand
Strand 2
A
218 220parallel
Strand 3
A
241 243parallel
Strand 4
A
272 274parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 14first strand
Strand 2
B
92 95parallel
Strand 3
B
132 133parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 99first strand
Strand 2
B
136 140parallel
Strand 3
B
164 168parallel
Strand 4
B
192 197parallel
Strand 5
B
217 220parallel
Strand 6
B
241 243parallel
Strand 7
B
272 274parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il