Analysis of interatomic Contacts of Structural Units in PDB entry:
3PBS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PBS entry

There is 1 chain in PDB entry 3PBS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 53PRO 561
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3PBS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
85 90Right-handed alpha
Helix 2
2
A
91 94Right-handed 310
Helix 3
3
A
95 104Right-handed alpha
Helix 4
4
A
106 117Right-handed alpha
Helix 5
5
A
130 139Right-handed alpha
Helix 6
6
A
157 160Right-handed 310
Helix 7
7
A
161 166Right-handed alpha
Helix 8
8
A
176 182Right-handed alpha
Helix 9
9
A
182 188Right-handed alpha
Helix 10
10
A
224 243Right-handed alpha
Helix 11
11
A
277 282Right-handed alpha
Helix 12
12
A
283 288Right-handed alpha
Helix 13
13
A
292 295Right-handed 310
Helix 14
14
A
296 307Right-handed alpha
Helix 15
15
A
342 348Right-handed alpha
Helix 16
16
A
350 362Right-handed alpha
Helix 17
17
A
362 374Right-handed alpha
Helix 18
18
A
398 407Right-handed alpha
Helix 19
19
A
414 427Right-handed alpha
Helix 20
20
A
450 467Right-handed alpha
Helix 21
21
A
471 475Right-handed 310
Helix 22
22
A
533 538Right-handed alpha
Helix 23
23
A
538 553Right-handed alpha
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There are 7 sheets in PDB entry 3PBS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
191 197anti-parallel
Strand 3
A
203 211anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 129first strand
Strand 2
A
72 84anti-parallel
Strand 3
A
145 154anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 129first strand
Strand 2
A
72 84anti-parallel
Strand 3
A
65 66anti-parallel
Strand 4
A
219 220parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 265first strand
Strand 2
A
246 253anti-parallel
Strand 3
A
518 525anti-parallel
Strand 4
A
503 511anti-parallel
Strand 5
A
482 489anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 317first strand
Strand 2
A
339 341anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 325first strand
Strand 2
A
328 331anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 431first strand
Strand 2
A
446 447anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il