Analysis of interatomic Contacts of Structural Units in PDB entry:
3PD6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PD6 entry

There are 6 chains in PDB entry 3PD6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 30LYS 430
B
 SER 30ALA 278
B
 ASN 280LYS 430
C
 SER 30LYS 430
D
 SER 30ALA 278
D
 ASN 280LYS 430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 3PD6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 54Right-handed alpha
Helix 2
2
A
77 90Right-handed alpha
Helix 3
3
A
102 115Right-handed alpha
Helix 4
4
A
118 124Right-handed alpha
Helix 5
5
A
133 149Right-handed alpha
Helix 6
6
A
164 173Right-handed alpha
Helix 7
7
A
190 200Right-handed alpha
Helix 8
8
A
222 236Right-handed alpha
Helix 9
9
A
253 258Right-handed alpha
Helix 10
10
A
258 267Right-handed alpha
Helix 11
11
A
283 286Right-handed 310
Helix 12
12
A
297 317Right-handed alpha
Helix 13
13
A
321 333Right-handed alpha
Helix 14
14
A
333 365Right-handed alpha
Helix 15
15
A
372 377Right-handed alpha
Helix 16
16
A
387 399Right-handed alpha
Helix 17
17
A
411 413Right-handed 310
Helix 18
18
A
417 430Right-handed alpha
Helix 19
19
B
77 90Right-handed alpha
Helix 20
20
B
102 115Right-handed alpha
Helix 21
21
B
118 123Right-handed alpha
Helix 22
22
B
133 149Right-handed alpha
Helix 23
23
B
164 173Right-handed alpha
Helix 24
24
B
190 200Right-handed alpha
Helix 25
25
B
222 236Right-handed alpha
Helix 26
26
B
253 258Right-handed alpha
Helix 27
27
B
258 267Right-handed alpha
Helix 28
28
B
283 286Right-handed 310
Helix 29
29
B
297 317Right-handed alpha
Helix 30
30
B
320 333Right-handed alpha
Helix 31
31
B
333 366Right-handed alpha
Helix 32
32
B
372 377Right-handed alpha
Helix 33
33
B
387 397Right-handed alpha
Helix 34
34
B
411 413Right-handed 310
Helix 35
35
B
414 430Right-handed alpha
Helix 36
36
C
42 53Right-handed alpha
Helix 37
37
C
77 90Right-handed alpha
Helix 38
38
C
102 115Right-handed alpha
Helix 39
39
C
118 124Right-handed alpha
Helix 40
40
C
133 149Right-handed alpha
Helix 41
41
C
164 172Right-handed alpha
Helix 42
42
C
190 200Right-handed alpha
Helix 43
43
C
222 237Right-handed alpha
Helix 44
44
C
253 258Right-handed alpha
Helix 45
45
C
258 267Right-handed alpha
Helix 46
46
C
283 286Right-handed 310
Helix 47
47
C
297 317Right-handed alpha
Helix 48
48
C
321 333Right-handed alpha
Helix 49
49
C
333 365Right-handed alpha
Helix 50
50
C
371 377Right-handed alpha
Helix 51
51
C
387 399Right-handed alpha
Helix 52
52
C
411 413Right-handed 310
Helix 53
53
C
417 430Right-handed alpha
Helix 54
54
D
43 53Right-handed alpha
Helix 55
55
D
77 89Right-handed alpha
Helix 56
56
D
102 115Right-handed alpha
Helix 57
57
D
118 124Right-handed alpha
Helix 58
58
D
132 149Right-handed alpha
Helix 59
59
D
164 173Right-handed alpha
Helix 60
60
D
190 201Right-handed alpha
Helix 61
61
D
222 236Right-handed alpha
Helix 62
62
D
253 258Right-handed alpha
Helix 63
63
D
258 267Right-handed alpha
Helix 64
64
D
283 287Right-handed 310
Helix 65
65
D
297 317Right-handed alpha
Helix 66
66
D
320 332Right-handed alpha
Helix 67
67
D
333 365Right-handed alpha
Helix 68
68
D
372 377Right-handed alpha
Helix 69
69
D
387 397Right-handed alpha
Helix 70
70
D
411 413Right-handed 310
Helix 71
71
D
417 430Right-handed alpha
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There are 14 sheets in PDB entry 3PD6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
400 401parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 132first strand
Strand 2
A
288 294anti-parallel
Strand 3
A
272 276anti-parallel
Strand 4
A
239 244parallel
Strand 5
A
206 210parallel
Strand 6
A
154 159parallel
Strand 7
A
175 180parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 383first strand
Strand 2
A
407 409anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
400 401parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 132first strand
Strand 2
B
288 294anti-parallel
Strand 3
B
272 276anti-parallel
Strand 4
B
239 244parallel
Strand 5
B
206 210parallel
Strand 6
B
154 159parallel
Strand 7
B
175 180parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 183first strand
Strand 2
B
188 189anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
381 383first strand
Strand 2
B
407 409anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 61first strand
Strand 2
C
400 401parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
126 132first strand
Strand 2
C
288 294anti-parallel
Strand 3
C
272 276anti-parallel
Strand 4
C
239 244parallel
Strand 5
C
206 210parallel
Strand 6
C
154 159parallel
Strand 7
C
175 180parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
381 383first strand
Strand 2
C
407 409anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 61first strand
Strand 2
D
400 401parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
126 131first strand
Strand 2
D
289 294anti-parallel
Strand 3
D
272 276anti-parallel
Strand 4
D
239 244parallel
Strand 5
D
206 210parallel
Strand 6
D
154 159parallel
Strand 7
D
175 180parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
182 183first strand
Strand 2
D
188 189anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
381 383first strand
Strand 2
D
407 409anti-parallel
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