Analysis of interatomic Contacts of Structural Units in PDB entry:
3PDB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PDB entry

There are 6 chains in PDB entry 3PDB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 30ALA 278
A
 ASN 280LYS 430
B
 SER 30LYS 430
C
 SER 30ALA 278
C
 ASN 280LYS 430
D
 SER 30LYS 430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 3PDB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 54Right-handed alpha
Helix 2
2
A
77 89Right-handed alpha
Helix 3
3
A
102 115Right-handed alpha
Helix 4
4
A
118 124Right-handed alpha
Helix 5
5
A
133 149Right-handed alpha
Helix 6
6
A
164 172Right-handed alpha
Helix 7
7
A
190 200Right-handed alpha
Helix 8
8
A
222 237Right-handed alpha
Helix 9
9
A
253 258Right-handed alpha
Helix 10
10
A
258 267Right-handed alpha
Helix 11
11
A
283 286Right-handed 310
Helix 12
12
A
297 317Right-handed alpha
Helix 13
13
A
320 333Right-handed alpha
Helix 14
14
A
333 365Right-handed alpha
Helix 15
15
A
372 377Right-handed alpha
Helix 16
16
A
387 399Right-handed alpha
Helix 17
17
A
411 413Right-handed 310
Helix 18
18
A
417 430Right-handed alpha
Helix 19
19
B
42 54Right-handed alpha
Helix 20
20
B
77 90Right-handed alpha
Helix 21
21
B
102 115Right-handed alpha
Helix 22
22
B
118 124Right-handed alpha
Helix 23
23
B
133 149Right-handed alpha
Helix 24
24
B
164 172Right-handed alpha
Helix 25
25
B
190 200Right-handed alpha
Helix 26
26
B
222 236Right-handed alpha
Helix 27
27
B
253 258Right-handed alpha
Helix 28
28
B
258 267Right-handed alpha
Helix 29
29
B
283 286Right-handed 310
Helix 30
30
B
297 317Right-handed alpha
Helix 31
31
B
320 332Right-handed alpha
Helix 32
32
B
333 364Right-handed alpha
Helix 33
33
B
372 377Right-handed alpha
Helix 34
34
B
387 399Right-handed alpha
Helix 35
35
B
411 413Right-handed 310
Helix 36
36
B
414 430Right-handed alpha
Helix 37
37
C
42 53Right-handed alpha
Helix 38
38
C
77 91Right-handed alpha
Helix 39
39
C
102 115Right-handed alpha
Helix 40
40
C
118 124Right-handed alpha
Helix 41
41
C
133 149Right-handed alpha
Helix 42
42
C
164 172Right-handed alpha
Helix 43
43
C
190 199Right-handed alpha
Helix 44
44
C
222 236Right-handed alpha
Helix 45
45
C
253 258Right-handed alpha
Helix 46
46
C
258 267Right-handed alpha
Helix 47
47
C
283 286Right-handed 310
Helix 48
48
C
297 317Right-handed alpha
Helix 49
49
C
321 332Right-handed alpha
Helix 50
50
C
333 365Right-handed alpha
Helix 51
51
C
371 377Right-handed alpha
Helix 52
52
C
387 399Right-handed alpha
Helix 53
53
C
411 413Right-handed 310
Helix 54
54
C
417 430Right-handed alpha
Helix 55
55
D
42 54Right-handed alpha
Helix 56
56
D
77 90Right-handed alpha
Helix 57
57
D
102 115Right-handed alpha
Helix 58
58
D
118 124Right-handed alpha
Helix 59
59
D
133 149Right-handed alpha
Helix 60
60
D
164 172Right-handed alpha
Helix 61
61
D
190 200Right-handed alpha
Helix 62
62
D
222 236Right-handed alpha
Helix 63
63
D
253 258Right-handed alpha
Helix 64
64
D
258 267Right-handed alpha
Helix 65
65
D
283 286Right-handed 310
Helix 66
66
D
297 317Right-handed alpha
Helix 67
67
D
321 332Right-handed alpha
Helix 68
68
D
333 365Right-handed alpha
Helix 69
69
D
371 377Right-handed alpha
Helix 70
70
D
387 399Right-handed alpha
Helix 71
71
D
411 413Right-handed 310
Helix 72
72
D
417 430Right-handed alpha
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There are 14 sheets in PDB entry 3PDB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
400 401parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 132first strand
Strand 2
A
288 294anti-parallel
Strand 3
A
272 276anti-parallel
Strand 4
A
239 244parallel
Strand 5
A
206 210parallel
Strand 6
A
154 159parallel
Strand 7
A
175 180parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 383first strand
Strand 2
A
407 409anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
400 401parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 132first strand
Strand 2
B
288 294anti-parallel
Strand 3
B
272 276anti-parallel
Strand 4
B
239 244parallel
Strand 5
B
206 210parallel
Strand 6
B
154 159parallel
Strand 7
B
175 180parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 183first strand
Strand 2
B
188 189anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
381 383first strand
Strand 2
B
407 409anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 61first strand
Strand 2
C
400 401parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
126 132first strand
Strand 2
C
288 294anti-parallel
Strand 3
C
272 276anti-parallel
Strand 4
C
239 244parallel
Strand 5
C
206 210parallel
Strand 6
C
154 159parallel
Strand 7
C
175 180parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
182 183first strand
Strand 2
C
188 189anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
381 383first strand
Strand 2
C
407 409anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 61first strand
Strand 2
D
400 401parallel
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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
126 132first strand
Strand 2
D
288 294anti-parallel
Strand 3
D
272 276anti-parallel
Strand 4
D
239 244parallel
Strand 5
D
206 210parallel
Strand 6
D
154 159parallel
Strand 7
D
175 180parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
381 383first strand
Strand 2
D
407 409anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il