Analysis of interatomic Contacts of Structural Units in PDB entry:
3PDW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PDW entry

There is 1 chain in PDB entry 3PDW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2HIS 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3PDW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 37Right-handed alpha
Helix 2
2
A
51 62Right-handed alpha
Helix 3
3
A
67 69Right-handed 310
Helix 4
4
A
74 86Right-handed alpha
Helix 5
5
A
96 106Right-handed alpha
Helix 6
6
A
127 140Right-handed alpha
Helix 7
7
A
162 175Right-handed alpha
Helix 8
8
A
186 197Right-handed alpha
Helix 9
9
A
199 201Right-handed 310
Helix 10
10
A
212 221Right-handed alpha
Helix 11
11
A
250 253Right-handed 310
Helix 12
12
A
254 262Right-handed alpha
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There are 3 sheets in PDB entry 3PDW. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 73first strand
Strand 2
A
41 45parallel
Strand 3
A
8 12parallel
Strand 4
A
203 207parallel
Strand 5
A
223 227parallel
Strand 6
A
246 248parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 110first strand
Strand 2
A
90 94parallel
Strand 3
A
117 120parallel
Strand 4
A
143 146parallel
Strand 5
A
179 180parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 155first strand
Strand 2
A
158 161anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il