Analysis of interatomic Contacts of Structural Units in PDB entry:
3PDY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PDY entry

There are 2 chains in PDB entry 3PDY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 545LYS 746
B
 HIS 541LEU 745
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3PDY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
545 569Right-handed alpha
Helix 2
2
A
574 605Right-handed alpha
Helix 3
3
A
606 609Right-handed 310
Helix 4
4
A
610 669Right-handed alpha
Helix 5
5
A
677 712Right-handed alpha
Helix 6
6
A
716 745Right-handed alpha
Helix 7
7
B
544 568Right-handed alpha
Helix 8
8
B
574 605Right-handed alpha
Helix 9
9
B
606 609Right-handed 310
Helix 10
10
B
610 669Right-handed alpha
Helix 11
11
B
677 712Right-handed alpha
Helix 12
12
B
716 743Right-handed alpha
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There are no sheets in PDB entry 3PDY
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