Analysis of interatomic Contacts of Structural Units in PDB entry:
3PE5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PE5 entry

There are 2 chains in PDB entry 3PE5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 101MSE 378
B
 THR 101MSE 378
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3PE5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
164 185Right-handed alpha
Helix 2
2
A
198 207Right-handed alpha
Helix 3
3
A
214 223Right-handed alpha
Helix 4
4
A
240 250Right-handed alpha
Helix 5
5
A
256 278Right-handed alpha
Helix 6
6
A
280 292Right-handed alpha
Helix 7
7
A
300 314Right-handed alpha
Helix 8
8
A
315 318Right-handed 310
Helix 9
9
A
346 360Right-handed alpha
Helix 10
10
A
363 368Right-handed alpha
Helix 11
11
B
164 185Right-handed alpha
Helix 12
12
B
198 206Right-handed alpha
Helix 13
13
B
214 222Right-handed alpha
Helix 14
14
B
240 250Right-handed alpha
Helix 15
15
B
256 277Right-handed alpha
Helix 16
16
B
280 292Right-handed alpha
Helix 17
17
B
300 314Right-handed alpha
Helix 18
18
B
315 318Right-handed 310
Helix 19
19
B
346 360Right-handed alpha
Helix 20
20
B
363 368Right-handed alpha
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There are 8 sheets in PDB entry 3PE5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 297first strand
Strand 2
A
190 195anti-parallel
Strand 3
A
108 116parallel
Strand 4
A
130 137anti-parallel
Strand 5
A
142 148anti-parallel
Strand 6
A
320 325parallel
Strand 7
A
376 377anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 156first strand
Strand 2
A
160 163anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 212first strand
Strand 2
A
236 239anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 336first strand
Strand 2
A
339 344anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
295 297first strand
Strand 2
B
190 195anti-parallel
Strand 3
B
108 116parallel
Strand 4
B
130 137anti-parallel
Strand 5
B
142 148anti-parallel
Strand 6
B
320 325parallel
Strand 7
B
376 377anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 156first strand
Strand 2
B
160 163anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 213first strand
Strand 2
B
235 239anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
331 336first strand
Strand 2
B
339 344anti-parallel
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