Analysis of interatomic Contacts of Structural Units in PDB entry:
3PE8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PE8 entry

There is 1 chain in PDB entry 3PE8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4THR 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 3PE8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 26Right-handed 310
Helix 2
2
A
30 47Right-handed alpha
Helix 3
3
A
101 110Right-handed alpha
Helix 4
4
A
124 129Right-handed alpha
Helix 5
5
A
135 145Right-handed alpha
Helix 6
6
A
145 156Right-handed alpha
Helix 7
7
A
161 168Right-handed alpha
Helix 8
8
A
175 177Right-handed 310
Helix 9
9
A
178 192Right-handed alpha
Helix 10
10
A
194 231Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3PE8. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 12first strand
Strand 2
A
15 20anti-parallel
Strand 3
A
52 57parallel
Strand 4
A
91 95parallel
Strand 5
A
112 116parallel
Strand 6
A
173 174parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 100first strand
Strand 2
A
120 122parallel
Strand 3
A
159 160anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il