Analysis of interatomic Contacts of Structural Units in PDB entry:
3PF1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PF1 entry

There are 2 chains in PDB entry 3PF1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1HIS 424
B
 ALA 1HIS 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3PF1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 16Right-handed alpha
Helix 2
2
A
26 32Right-handed 310
Helix 3
3
A
33 40Right-handed 310
Helix 4
4
A
114 118Right-handed 310
Helix 5
5
A
161 173Right-handed alpha
Helix 6
6
A
174 177Right-handed 310
Helix 7
7
A
178 191Right-handed alpha
Helix 8
8
A
244 248Right-handed 310
Helix 9
9
A
298 301Right-handed 310
Helix 10
10
A
353 357Right-handed 310
Helix 11
11
B
9 16Right-handed alpha
Helix 12
12
B
26 30Right-handed 310
Helix 13
13
B
33 40Right-handed 310
Helix 14
14
B
114 118Right-handed 310
Helix 15
15
B
161 173Right-handed alpha
Helix 16
16
B
174 177Right-handed 310
Helix 17
17
B
178 190Right-handed alpha
Helix 18
18
B
244 248Right-handed 310
Helix 19
19
B
298 301Right-handed 310
Helix 20
20
B
353 357Right-handed 310
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There are 4 sheets in PDB entry 3PF1. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 18 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
120 135anti-parallel
Strand 3
A
92 99anti-parallel
Strand 4
A
77 89anti-parallel
Strand 5
A
44 59anti-parallel
Strand 6
A
402 420anti-parallel
Strand 7
A
381 399anti-parallel
Strand 8
A
366 376anti-parallel
Strand 9
A
339 348anti-parallel
Strand 10
A
324 333anti-parallel
Strand 11
A
287 296anti-parallel
Strand 12
A
274 281anti-parallel
Strand 13
A
221 228anti-parallel
Strand 14
A
196 218anti-parallel
Strand 15
A
231 240anti-parallel
Strand 16
A
263 271anti-parallel
Strand 17
A
303 307anti-parallel
Strand 18
A
313 318anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
120 135anti-parallel
Strand 3
A
140 158anti-parallel
Strand 4
A
196 218anti-parallel
Strand 5
A
231 240anti-parallel
Strand 6
A
263 271anti-parallel
Strand 7
A
303 307anti-parallel
Strand 8
A
313 318anti-parallel
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There are 16 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
402 420first strand
Strand 2
B
44 60anti-parallel
Strand 3
B
77 87anti-parallel
Strand 4
B
92 99anti-parallel
Strand 5
B
120 135anti-parallel
Strand 6
B
140 158anti-parallel
Strand 7
B
196 216anti-parallel
Strand 8
B
221 228anti-parallel
Strand 9
B
274 281anti-parallel
Strand 10
B
287 296anti-parallel
Strand 11
B
324 333anti-parallel
Strand 12
B
339 348anti-parallel
Strand 13
B
366 376anti-parallel
Strand 14
B
381 392anti-parallel
Strand 15
B
402 420anti-parallel
Strand 16
B
395 399anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 107first strand
Strand 2
B
120 135anti-parallel
Strand 3
B
140 158anti-parallel
Strand 4
B
196 216anti-parallel
Strand 5
B
231 240anti-parallel
Strand 6
B
263 271anti-parallel
Strand 7
B
303 307anti-parallel
Strand 8
B
313 318anti-parallel
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