Analysis of interatomic Contacts of Structural Units in PDB entry:
3PF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PF8 entry

There are 2 chains in PDB entry 3PF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -5ASN 245
B
 ALA 2ASN 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3PF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 52Right-handed alpha
Helix 2
2
A
71 75Right-handed 310
Helix 3
3
A
77 92Right-handed alpha
Helix 4
4
A
107 119Right-handed alpha
Helix 5
5
A
134 142Right-handed alpha
Helix 6
6
A
167 174Right-handed alpha
Helix 7
7
A
177 183Right-handed alpha
Helix 8
8
A
202 212Right-handed alpha
Helix 9
9
A
228 230Right-handed 310
Helix 10
10
A
231 243Right-handed alpha
Helix 11
11
B
40 53Right-handed alpha
Helix 12
12
B
71 75Right-handed 310
Helix 13
13
B
76 94Right-handed alpha
Helix 14
14
B
107 119Right-handed alpha
Helix 15
15
B
134 140Right-handed alpha
Helix 16
16
B
167 175Right-handed alpha
Helix 17
17
B
177 183Right-handed alpha
Helix 18
18
B
202 212Right-handed alpha
Helix 19
19
B
230 245Right-handed alpha
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There are 6 sheets in PDB entry 3PF8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
A
11 18anti-parallel
Strand 3
A
56 60anti-parallel
Strand 4
A
25 31parallel
Strand 5
A
97 106parallel
Strand 6
A
123 131parallel
Strand 7
A
189 194parallel
Strand 8
A
215 220parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
147 148anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
164 166anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 8first strand
Strand 2
B
11 18anti-parallel
Strand 3
B
55 60anti-parallel
Strand 4
B
25 31parallel
Strand 5
B
97 106parallel
Strand 6
B
123 131parallel
Strand 7
B
189 194parallel
Strand 8
B
215 220parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 144first strand
Strand 2
B
147 148anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 160first strand
Strand 2
B
163 166anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il