Analysis of interatomic Contacts of Structural Units in PDB entry:
3PFC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PFC entry

There is 1 chain in PDB entry 3PFC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -5GLN 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3PFC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 53Right-handed alpha
Helix 2
2
A
71 75Right-handed 310
Helix 3
3
A
76 93Right-handed alpha
Helix 4
4
A
106 119Right-handed alpha
Helix 5
5
A
133 142Right-handed alpha
Helix 6
6
A
167 175Right-handed alpha
Helix 7
7
A
177 183Right-handed alpha
Helix 8
8
A
202 212Right-handed alpha
Helix 9
9
A
228 230Right-handed 310
Helix 10
10
A
231 244Right-handed alpha
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There are 3 sheets in PDB entry 3PFC. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
0 8first strand
Strand 2
A
11 19anti-parallel
Strand 3
A
56 60anti-parallel
Strand 4
A
25 31parallel
Strand 5
A
97 105parallel
Strand 6
A
123 129parallel
Strand 7
A
189 194parallel
Strand 8
A
215 220parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
147 148anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 160first strand
Strand 2
A
163 166anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il