Analysis of interatomic Contacts of Structural Units in PDB entry:
3PFK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PFK entry

There is 1 chain in PDB entry 3PFK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 3PFK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 30Right-handed alpha
Helix 2
2
A
40 47Right-handed alpha
Helix 3
4A
A
73 78Right-handed 310
Helix 4
4
A
78 93Right-handed alpha
Helix 5
5
A
103 116Right-handed alpha
Helix 6
6
A
138 160Right-handed alpha
Helix 7
7
A
174 185Right-handed alpha
Helix 8
8
A
197 211Right-handed alpha
Helix 9
9
A
226 238Right-handed alpha
Helix 10
10
A
248 253Right-handed 310
Helix 11
11
A
257 277Right-handed alpha
Helix 12
12
A
295 303Right-handed alpha
Helix 13
13
A
308 319Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3PFK. Click on sheet of interest to get list of strands forming it: S1, S2,

There are 7 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 52first strand
Strand 2
A
33 38anti-parallel
Strand 3
A
2 9parallel
Strand 4
A
96 101parallel
Strand 5
A
118 122parallel
Strand 6
A
282 287parallel
Strand 7
A
290 294anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
216 221parallel
Strand 3
A
162 168parallel
Strand 4
A
241 247parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il