Analysis of interatomic Contacts of Structural Units in PDB entry:
3PFV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PFV entry

There are 6 chains in PDB entry 3PFV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 44ALA 345
B
 ALA 40TYR 349
C
 LEU 1066ARG 1068
C
 SER 1070GLY 1075
D
 LEU 1066ARG 1068
D
 SER 1070ALA 1076
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3PFV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 61Right-handed alpha
Helix 2
2
A
62 66Right-handed 310
Helix 3
3
A
73 92Right-handed alpha
Helix 4
4
A
94 103Right-handed alpha
Helix 5
5
A
104 129Right-handed alpha
Helix 6
6
A
130 134Right-handed 310
Helix 7
7
A
137 161Right-handed alpha
Helix 8
8
A
162 165Right-handed 310
Helix 9
9
A
167 171Right-handed 310
Helix 10
10
A
175 187Right-handed alpha
Helix 11
11
A
194 205Right-handed alpha
Helix 12
12
A
209 221Right-handed alpha
Helix 13
13
A
230 240Right-handed alpha
Helix 14
14
A
242 244Right-handed 310
Helix 15
15
A
245 254Right-handed alpha
Helix 16
16
A
265 274Right-handed alpha
Helix 17
17
A
275 277Right-handed 310
Helix 18
18
A
315 326Right-handed alpha
Helix 19
19
A
341 345Right-handed 310
Helix 20
20
B
42 61Right-handed alpha
Helix 21
21
B
62 66Right-handed 310
Helix 22
22
B
73 92Right-handed alpha
Helix 23
23
B
94 103Right-handed alpha
Helix 24
24
B
104 129Right-handed alpha
Helix 25
25
B
130 133Right-handed 310
Helix 26
26
B
137 161Right-handed alpha
Helix 27
27
B
162 165Right-handed 310
Helix 28
28
B
167 171Right-handed 310
Helix 29
29
B
175 187Right-handed alpha
Helix 30
30
B
194 205Right-handed alpha
Helix 31
31
B
209 221Right-handed alpha
Helix 32
32
B
230 240Right-handed alpha
Helix 33
33
B
242 244Right-handed 310
Helix 34
34
B
245 254Right-handed alpha
Helix 35
35
B
265 275Right-handed alpha
Helix 36
36
B
315 326Right-handed alpha
Helix 37
37
B
341 346Right-handed alpha
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There are 4 sheets in PDB entry 3PFV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 193first strand
Strand 2
A
227 229anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 309first strand
Strand 2
A
295 300anti-parallel
Strand 3
A
282 287anti-parallel
Strand 4
A
331 332parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 193first strand
Strand 2
B
227 229anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
306 309first strand
Strand 2
B
295 300anti-parallel
Strand 3
B
282 287anti-parallel
Strand 4
B
331 332parallel
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