Analysis of interatomic Contacts of Structural Units in PDB entry:
3PG6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PG6 entry

There are 4 chains in PDB entry 3PG6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 606GLU 740
B
 LYS 607GLU 740
C
 GLN 606GLU 740
D
 LYS 607GLU 740
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3PG6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
667 683Right-handed alpha
Helix 2
2
A
715 719Right-handed 310
Helix 3
3
A
725 737Right-handed alpha
Helix 4
4
B
667 683Right-handed alpha
Helix 5
5
B
715 719Right-handed 310
Helix 6
6
B
725 737Right-handed alpha
Helix 7
7
C
667 683Right-handed alpha
Helix 8
8
C
715 719Right-handed 310
Helix 9
9
C
725 737Right-handed alpha
Helix 10
10
D
667 683Right-handed alpha
Helix 11
11
D
715 719Right-handed 310
Helix 12
12
D
725 736Right-handed alpha
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There are 12 sheets in PDB entry 3PG6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
613 620first strand
Strand 2
A
631 639anti-parallel
Strand 3
A
658 666anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
642 643first strand
Strand 2
A
654 655anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
687 692first strand
Strand 2
A
697 703anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
613 620first strand
Strand 2
B
632 639anti-parallel
Strand 3
B
658 665anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
642 643first strand
Strand 2
B
654 655anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
687 692first strand
Strand 2
B
697 703anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
613 620first strand
Strand 2
C
632 639anti-parallel
Strand 3
C
658 665anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
642 643first strand
Strand 2
C
654 655anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
687 692first strand
Strand 2
C
697 703anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
613 620first strand
Strand 2
D
631 639anti-parallel
Strand 3
D
658 666anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
642 643first strand
Strand 2
D
654 655anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
687 692first strand
Strand 2
D
697 703anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il