Analysis of interatomic Contacts of Structural Units in PDB entry:
3PG8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PG8 entry

There are 4 chains in PDB entry 3PG8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 67PRO 101
A
 SER 103ASN 338
B
 GLY 67PRO 101
B
 SER 103ASN 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3PG8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
106 120Right-handed alpha
Helix 2
2
A
143 158Right-handed alpha
Helix 3
3
A
167 169Right-handed 310
Helix 4
4
A
170 178Right-handed alpha
Helix 5
5
A
184 188Right-handed 310
Helix 6
6
A
190 199Right-handed alpha
Helix 7
7
A
213 227Right-handed alpha
Helix 8
8
A
253 262Right-handed alpha
Helix 9
9
A
276 278Right-handed 310
Helix 10
10
A
279 291Right-handed alpha
Helix 11
11
A
302 306Right-handed 310
Helix 12
12
A
315 334Right-handed alpha
Helix 13
13
B
106 120Right-handed alpha
Helix 14
14
B
143 157Right-handed alpha
Helix 15
15
B
167 169Right-handed 310
Helix 16
16
B
170 178Right-handed alpha
Helix 17
17
B
184 188Right-handed 310
Helix 18
18
B
190 198Right-handed alpha
Helix 19
19
B
199 201Right-handed 310
Helix 20
20
B
213 227Right-handed alpha
Helix 21
21
B
253 262Right-handed alpha
Helix 22
22
B
276 278Right-handed 310
Helix 23
23
B
279 291Right-handed alpha
Helix 24
24
B
309 313Right-handed 310
Helix 25
25
B
315 334Right-handed alpha
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There are 4 sheets in PDB entry 3PG8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
89 91anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 337first strand
Strand 2
A
94 100parallel
Strand 3
A
294 298parallel
Strand 4
A
266 268parallel
Strand 5
A
232 236parallel
Strand 6
A
204 207parallel
Strand 7
A
180 183parallel
Strand 8
A
160 164parallel
Strand 9
A
124 129parallel
Strand 10
A
94 100parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 84first strand
Strand 2
B
89 90anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
336 337first strand
Strand 2
B
94 100parallel
Strand 3
B
294 298parallel
Strand 4
B
266 268parallel
Strand 5
B
232 236parallel
Strand 6
B
204 207parallel
Strand 7
B
180 183parallel
Strand 8
B
160 165parallel
Strand 9
B
124 130parallel
Strand 10
B
94 100parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il