Analysis of interatomic Contacts of Structural Units in PDB entry:
3PGJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PGJ entry

There are 4 chains in PDB entry 3PGJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 5GLY 276
B
 ILE 5GLU 275
C
 ILE 5GLU 275
D
 ILE 5GLU 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 3PGJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 32Right-handed alpha
Helix 2
2
A
46 57Right-handed alpha
Helix 3
3
A
68 76Right-handed alpha
Helix 4
4
A
80 87Right-handed alpha
Helix 5
5
A
105 117Right-handed alpha
Helix 6
6
A
132 145Right-handed alpha
Helix 7
7
A
156 168Right-handed alpha
Helix 8
8
A
169 171Right-handed 310
Helix 9
9
A
179 181Right-handed 310
Helix 10
10
A
193 198Right-handed alpha
Helix 11
11
A
204 208Right-handed 310
Helix 12
12
A
224 233Right-handed alpha
Helix 13
13
A
241 258Right-handed alpha
Helix 14
14
A
263 275Right-handed alpha
Helix 15
15
B
19 31Right-handed alpha
Helix 16
16
B
45 57Right-handed alpha
Helix 17
17
B
68 76Right-handed alpha
Helix 18
18
B
80 87Right-handed alpha
Helix 19
19
B
105 117Right-handed alpha
Helix 20
20
B
132 137Right-handed alpha
Helix 21
21
B
138 145Right-handed alpha
Helix 22
22
B
156 169Right-handed alpha
Helix 23
23
B
179 181Right-handed 310
Helix 24
24
B
204 208Right-handed 310
Helix 25
25
B
224 233Right-handed alpha
Helix 26
26
B
241 258Right-handed alpha
Helix 27
27
B
263 275Right-handed alpha
Helix 28
28
C
19 31Right-handed alpha
Helix 29
29
C
46 57Right-handed alpha
Helix 30
30
C
68 76Right-handed alpha
Helix 31
31
C
80 87Right-handed alpha
Helix 32
32
C
105 117Right-handed alpha
Helix 33
33
C
132 137Right-handed alpha
Helix 34
34
C
138 145Right-handed alpha
Helix 35
35
C
156 168Right-handed alpha
Helix 36
36
C
204 206Right-handed 310
Helix 37
37
C
224 233Right-handed alpha
Helix 38
38
C
241 258Right-handed alpha
Helix 39
39
C
263 275Right-handed alpha
Helix 40
40
D
19 31Right-handed alpha
Helix 41
41
D
46 57Right-handed alpha
Helix 42
42
D
68 76Right-handed alpha
Helix 43
43
D
80 87Right-handed alpha
Helix 44
44
D
105 117Right-handed alpha
Helix 45
45
D
132 144Right-handed alpha
Helix 46
46
D
156 167Right-handed alpha
Helix 47
47
D
168 171Right-handed 310
Helix 48
48
D
179 181Right-handed 310
Helix 49
49
D
193 198Right-handed 310
Helix 50
50
D
204 208Right-handed 310
Helix 51
51
D
224 233Right-handed alpha
Helix 52
52
D
241 258Right-handed alpha
Helix 53
53
D
263 275Right-handed alpha
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There are 8 sheets in PDB entry 3PGJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 41first strand
Strand 2
A
6 12parallel
Strand 3
A
59 64parallel
Strand 4
A
91 94anti-parallel
Strand 5
A
100 103anti-parallel
Strand 6
A
78 79parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 177first strand
Strand 2
A
149 154parallel
Strand 3
A
125 129parallel
Strand 4
A
187 190parallel
Strand 5
A
213 216parallel
Strand 6
A
237 239parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 41first strand
Strand 2
B
6 12parallel
Strand 3
B
61 64parallel
Strand 4
B
91 94anti-parallel
Strand 5
B
100 103anti-parallel
Strand 6
B
78 79parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 177first strand
Strand 2
B
149 154parallel
Strand 3
B
125 129parallel
Strand 4
B
187 190parallel
Strand 5
B
213 216parallel
Strand 6
B
237 239parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 41first strand
Strand 2
C
6 12parallel
Strand 3
C
61 64parallel
Strand 4
C
91 94anti-parallel
Strand 5
C
100 103anti-parallel
Strand 6
C
78 79parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
173 177first strand
Strand 2
C
149 154parallel
Strand 3
C
125 129parallel
Strand 4
C
185 190parallel
Strand 5
C
208 216parallel
Strand 6
C
237 239parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 41first strand
Strand 2
D
6 12parallel
Strand 3
D
59 64parallel
Strand 4
D
91 94anti-parallel
Strand 5
D
100 103anti-parallel
Strand 6
D
78 79parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
173 177first strand
Strand 2
D
149 154parallel
Strand 3
D
125 129parallel
Strand 4
D
187 190parallel
Strand 5
D
213 216parallel
Strand 6
D
237 239parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il