Analysis of interatomic Contacts of Structural Units in PDB entry:
3PGY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PGY entry

There are 4 chains in PDB entry 3PGY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 412
B
 MET 1TYR 411
C
 ALA 0TYR 411
D
 ASN -1TYR 51
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 83 helices in PDB entry 3PGY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 8Right-handed alpha
Helix 2
2
A
8 25Right-handed alpha
Helix 3
3
A
36 44Right-handed alpha
Helix 4
4
A
45 50Right-handed 310
Helix 5
5
A
64 83Right-handed alpha
Helix 6
6
A
93 106Right-handed alpha
Helix 7
7
A
130 135Right-handed alpha
Helix 8
8
A
151 163Right-handed alpha
Helix 9
9
A
179 191Right-handed alpha
Helix 10
10
A
201 207Right-handed alpha
Helix 11
11
A
212 216Right-handed 310
Helix 12
12
A
242 251Right-handed alpha
Helix 13
13
A
259 275Right-handed alpha
Helix 14
14
A
275 299Right-handed alpha
Helix 15
15
A
305 307Right-handed 310
Helix 16
16
A
317 322Right-handed alpha
Helix 17
17
A
324 335Right-handed alpha
Helix 18
18
A
361 367Right-handed alpha
Helix 19
19
A
370 387Right-handed alpha
Helix 20
20
A
390 408Right-handed alpha
Helix 21
21
B
1 8Right-handed alpha
Helix 22
22
B
8 25Right-handed alpha
Helix 23
23
B
36 44Right-handed alpha
Helix 24
24
B
45 50Right-handed 310
Helix 25
25
B
64 83Right-handed alpha
Helix 26
26
B
93 106Right-handed alpha
Helix 27
27
B
130 135Right-handed alpha
Helix 28
28
B
151 163Right-handed alpha
Helix 29
29
B
179 191Right-handed alpha
Helix 30
30
B
201 207Right-handed alpha
Helix 31
31
B
212 216Right-handed 310
Helix 32
32
B
225 229Right-handed 310
Helix 33
33
B
242 251Right-handed alpha
Helix 34
34
B
259 274Right-handed alpha
Helix 35
35
B
275 299Right-handed alpha
Helix 36
36
B
305 307Right-handed 310
Helix 37
37
B
317 322Right-handed alpha
Helix 38
38
B
324 335Right-handed alpha
Helix 39
39
B
361 367Right-handed alpha
Helix 40
40
B
370 387Right-handed alpha
Helix 41
41
B
390 408Right-handed alpha
Helix 42
42
C
1 8Right-handed alpha
Helix 43
43
C
8 25Right-handed alpha
Helix 44
44
C
36 44Right-handed alpha
Helix 45
45
C
45 50Right-handed 310
Helix 46
46
C
64 83Right-handed alpha
Helix 47
47
C
93 106Right-handed alpha
Helix 48
48
C
130 135Right-handed alpha
Helix 49
49
C
151 163Right-handed alpha
Helix 50
50
C
179 191Right-handed alpha
Helix 51
51
C
201 207Right-handed alpha
Helix 52
52
C
212 216Right-handed 310
Helix 53
53
C
225 229Right-handed 310
Helix 54
54
C
242 251Right-handed alpha
Helix 55
55
C
259 275Right-handed alpha
Helix 56
56
C
275 298Right-handed alpha
Helix 57
57
C
305 307Right-handed 310
Helix 58
58
C
317 322Right-handed alpha
Helix 59
59
C
324 335Right-handed alpha
Helix 60
60
C
361 367Right-handed alpha
Helix 61
61
C
370 387Right-handed alpha
Helix 62
62
C
390 408Right-handed alpha
Helix 63
63
D
1 8Right-handed alpha
Helix 64
64
D
8 25Right-handed alpha
Helix 65
65
D
36 44Right-handed alpha
Helix 66
66
D
45 50Right-handed 310
Helix 67
67
D
64 83Right-handed alpha
Helix 68
68
D
93 106Right-handed alpha
Helix 69
69
D
130 135Right-handed alpha
Helix 70
70
D
151 163Right-handed alpha
Helix 71
71
D
179 190Right-handed alpha
Helix 72
72
D
201 207Right-handed alpha
Helix 73
73
D
212 216Right-handed 310
Helix 74
74
D
225 229Right-handed 310
Helix 75
75
D
242 251Right-handed alpha
Helix 76
76
D
259 274Right-handed alpha
Helix 77
77
D
275 299Right-handed alpha
Helix 78
78
D
305 307Right-handed 310
Helix 79
79
D
317 322Right-handed alpha
Helix 80
80
D
324 335Right-handed alpha
Helix 81
81
D
361 368Right-handed alpha
Helix 82
82
D
370 386Right-handed alpha
Helix 83
83
D
390 408Right-handed alpha
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There are 14 sheets in PDB entry 3PGY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
337 338parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 88first strand
Strand 2
A
234 238anti-parallel
Strand 3
A
219 223anti-parallel
Strand 4
A
193 197parallel
Strand 5
A
166 170parallel
Strand 6
A
111 114parallel
Strand 7
A
137 140parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 303first strand
Strand 2
A
312 316anti-parallel
Strand 3
A
356 360anti-parallel
Strand 4
A
340 342anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 27first strand
Strand 2
B
337 338parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 55first strand
Strand 2
B
58 59anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 88first strand
Strand 2
B
234 238anti-parallel
Strand 3
B
219 223anti-parallel
Strand 4
B
193 197parallel
Strand 5
B
166 170parallel
Strand 6
B
111 115parallel
Strand 7
B
137 141parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
302 303first strand
Strand 2
B
312 316anti-parallel
Strand 3
B
356 360anti-parallel
Strand 4
B
340 342anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 27first strand
Strand 2
C
337 338parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 88first strand
Strand 2
C
234 238anti-parallel
Strand 3
C
219 223anti-parallel
Strand 4
C
193 197parallel
Strand 5
C
166 170parallel
Strand 6
C
111 115parallel
Strand 7
C
137 141parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
302 303first strand
Strand 2
C
312 316anti-parallel
Strand 3
C
356 360anti-parallel
Strand 4
C
340 342anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
26 27first strand
Strand 2
D
337 338parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
54 55first strand
Strand 2
D
58 59anti-parallel
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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
86 88first strand
Strand 2
D
234 238anti-parallel
Strand 3
D
219 223anti-parallel
Strand 4
D
193 197parallel
Strand 5
D
166 170parallel
Strand 6
D
111 115parallel
Strand 7
D
137 141parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
302 303first strand
Strand 2
D
312 316anti-parallel
Strand 3
D
356 360anti-parallel
Strand 4
D
340 342anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il