Analysis of interatomic Contacts of Structural Units in PDB entry:
3PIB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PIB entry

There are 6 chains in PDB entry 3PIB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1PHE 62
A
 SER 66GLY 229
B
 HIS -6PHE 62
B
 SER 66ARG 231
C
 SER 2PHE 62
C
 SER 66GLY 166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 3PIB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
54 62Right-handed 310
Helix 2
2
A
80 84Right-handed 310
Helix 3
3
A
183 187Right-handed 310
Helix 4
4
B
-1 3Right-handed 310
Helix 5
5
B
54 62Right-handed 310
Helix 6
6
B
80 84Right-handed 310
Helix 7
7
B
183 187Right-handed 310
Helix 8
8
C
54 62Right-handed 310
Helix 9
9
C
80 84Right-handed 310
Helix 10
10
C
183 187Right-handed 310
Helix 11
11
D
54 62Right-handed 310
Helix 12
12
D
80 84Right-handed 310
Helix 13
13
D
183 187Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 3PIB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
210 220parallel
Strand 3
A
38 47anti-parallel
Strand 4
A
22 33anti-parallel
Strand 5
A
9 19anti-parallel
Strand 6
A
114 124parallel
Strand 7
A
101 111anti-parallel
Strand 8
A
88 96anti-parallel
Strand 9
A
169 180anti-parallel
Strand 10
A
153 164anti-parallel
Strand 11
A
137 140anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
210 220parallel
Strand 3
A
193 205anti-parallel
Strand 4
A
143 150anti-parallel
Strand 5
A
153 164anti-parallel
Strand 6
A
137 140anti-parallel
Back to list of sheets
Back to top of page

There are 11 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
210 220parallel
Strand 3
B
38 47anti-parallel
Strand 4
B
22 33anti-parallel
Strand 5
B
9 19anti-parallel
Strand 6
B
114 124parallel
Strand 7
B
101 111anti-parallel
Strand 8
B
88 96anti-parallel
Strand 9
B
169 180anti-parallel
Strand 10
B
153 164anti-parallel
Strand 11
B
137 140anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
210 220parallel
Strand 3
B
193 205anti-parallel
Strand 4
B
143 150anti-parallel
Strand 5
B
153 164anti-parallel
Strand 6
B
137 140anti-parallel
Back to list of sheets
Back to top of page

There are 11 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
71 72first strand
Strand 2
C
210 220parallel
Strand 3
C
38 47anti-parallel
Strand 4
C
22 33anti-parallel
Strand 5
C
9 19anti-parallel
Strand 6
C
114 124parallel
Strand 7
C
101 111anti-parallel
Strand 8
C
88 96anti-parallel
Strand 9
C
169 180anti-parallel
Strand 10
C
153 164anti-parallel
Strand 11
C
137 140anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
71 72first strand
Strand 2
C
210 220parallel
Strand 3
C
193 205anti-parallel
Strand 4
C
143 150anti-parallel
Strand 5
C
153 164anti-parallel
Strand 6
C
137 140anti-parallel
Back to list of sheets
Back to top of page

There are 11 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
71 72first strand
Strand 2
D
210 220parallel
Strand 3
D
38 47anti-parallel
Strand 4
D
22 33anti-parallel
Strand 5
D
9 19anti-parallel
Strand 6
D
114 124parallel
Strand 7
D
101 111anti-parallel
Strand 8
D
88 96anti-parallel
Strand 9
D
169 180anti-parallel
Strand 10
D
153 164anti-parallel
Strand 11
D
137 140anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
71 72first strand
Strand 2
D
210 220parallel
Strand 3
D
193 205anti-parallel
Strand 4
D
143 150anti-parallel
Strand 5
D
153 164anti-parallel
Strand 6
D
137 140anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il