Analysis of interatomic Contacts of Structural Units in PDB entry:
3PJ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PJ0 entry

There are 7 chains in PDB entry 3PJ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0TYR 206
A
 GLY 208LEU 358
B
 GLY 0TYR 206
B
 GLY 208LEU 358
C
 ASN 3TYR 206
C
 GLY 208GLU 355
D
 GLY 0SER 132
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 3PJ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
0 11Right-handed alpha
Helix 2
2
A
23 31Right-handed alpha
Helix 3
3
A
46 61Right-handed alpha
Helix 4
4
A
70 87Right-handed alpha
Helix 5
5
A
97 102Right-handed alpha
Helix 6
6
A
105 112Right-handed alpha
Helix 7
7
A
126 132Right-handed alpha
Helix 8
8
A
155 170Right-handed alpha
Helix 9
9
A
180 182Right-handed 310
Helix 10
10
A
183 188Right-handed alpha
Helix 11
11
A
190 196Right-handed alpha
Helix 12
12
A
220 234Right-handed alpha
Helix 13
13
A
241 256Right-handed alpha
Helix 14
14
A
258 275Right-handed alpha
Helix 15
15
A
298 314Right-handed alpha
Helix 16
16
A
338 342Right-handed 310
Helix 17
17
A
343 358Right-handed alpha
Helix 18
18
B
1 12Right-handed alpha
Helix 19
19
B
23 32Right-handed alpha
Helix 20
20
B
46 61Right-handed alpha
Helix 21
21
B
70 87Right-handed alpha
Helix 22
22
B
97 102Right-handed alpha
Helix 23
23
B
105 112Right-handed alpha
Helix 24
24
B
126 132Right-handed alpha
Helix 25
25
B
155 170Right-handed alpha
Helix 26
26
B
179 188Right-handed alpha
Helix 27
27
B
190 196Right-handed alpha
Helix 28
28
B
220 234Right-handed alpha
Helix 29
29
B
241 256Right-handed alpha
Helix 30
30
B
258 275Right-handed alpha
Helix 31
31
B
298 314Right-handed alpha
Helix 32
32
B
338 342Right-handed 310
Helix 33
33
B
343 358Right-handed alpha
Helix 34
34
C
4 11Right-handed alpha
Helix 35
35
C
23 32Right-handed alpha
Helix 36
36
C
46 61Right-handed alpha
Helix 37
37
C
70 87Right-handed alpha
Helix 38
38
C
97 102Right-handed alpha
Helix 39
39
C
105 112Right-handed alpha
Helix 40
40
C
126 132Right-handed alpha
Helix 41
41
C
155 170Right-handed alpha
Helix 42
42
C
180 182Right-handed 310
Helix 43
43
C
183 188Right-handed alpha
Helix 44
44
C
190 196Right-handed alpha
Helix 45
45
C
220 234Right-handed alpha
Helix 46
46
C
241 256Right-handed alpha
Helix 47
47
C
258 275Right-handed alpha
Helix 48
48
C
298 314Right-handed alpha
Helix 49
49
C
338 342Right-handed 310
Helix 50
50
C
343 355Right-handed alpha
Helix 51
51
D
0 12Right-handed alpha
Helix 52
52
D
23 31Right-handed alpha
Helix 53
53
D
46 61Right-handed alpha
Helix 54
54
D
70 87Right-handed alpha
Helix 55
55
D
97 102Right-handed alpha
Helix 56
56
D
105 112Right-handed alpha
Helix 57
57
D
126 132Right-handed alpha
Helix 58
58
D
146 150Right-handed 310
Helix 59
59
D
155 170Right-handed alpha
Helix 60
60
D
180 182Right-handed 310
Helix 61
61
D
183 188Right-handed alpha
Helix 62
62
D
190 196Right-handed alpha
Helix 63
63
D
220 234Right-handed alpha
Helix 64
64
D
241 256Right-handed alpha
Helix 65
65
D
258 275Right-handed alpha
Helix 66
66
D
298 314Right-handed alpha
Helix 67
67
D
336 342Right-handed 310
Helix 68
68
D
343 358Right-handed alpha
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There are 12 sheets in PDB entry 3PJ0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
A
315 316parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 68first strand
Strand 2
A
215 219anti-parallel
Strand 3
A
200 204anti-parallel
Strand 4
A
172 177parallel
Strand 5
A
139 143parallel
Strand 6
A
90 93parallel
Strand 7
A
114 117parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 282first strand
Strand 2
A
290 295anti-parallel
Strand 3
A
328 334anti-parallel
Strand 4
A
322 325anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 15first strand
Strand 2
B
315 316parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 68first strand
Strand 2
B
215 219anti-parallel
Strand 3
B
200 204anti-parallel
Strand 4
B
172 177parallel
Strand 5
B
139 143parallel
Strand 6
B
90 93parallel
Strand 7
B
114 117parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
279 282first strand
Strand 2
B
290 295anti-parallel
Strand 3
B
328 334anti-parallel
Strand 4
B
322 325anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 15first strand
Strand 2
C
315 316parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 68first strand
Strand 2
C
215 219anti-parallel
Strand 3
C
200 204anti-parallel
Strand 4
C
172 177parallel
Strand 5
C
139 143parallel
Strand 6
C
90 93parallel
Strand 7
C
114 117parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
279 282first strand
Strand 2
C
290 295anti-parallel
Strand 3
C
328 334anti-parallel
Strand 4
C
322 325anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
14 15first strand
Strand 2
D
315 316parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
64 68first strand
Strand 2
D
215 219anti-parallel
Strand 3
D
200 204anti-parallel
Strand 4
D
172 177parallel
Strand 5
D
139 143parallel
Strand 6
D
90 93parallel
Strand 7
D
114 117parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
279 282first strand
Strand 2
D
290 295anti-parallel
Strand 3
D
328 334anti-parallel
Strand 4
D
322 325anti-parallel
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