Analysis of interatomic Contacts of Structural Units in PDB entry:
3PJA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PJA entry

There are 6 chains in PDB entry 3PJA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ASN 218
B
 SER 2ASN 218
C
 MET 1LYS 219
D
 SER 2ASN 218
E
 MET 1ASN 218
F
 MET 1SER 158
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are110 helices in PDB entry 3PJA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 44Right-handed alpha
Helix 2
2
A
53 76Right-handed alpha
Helix 3
3
A
80 82Right-handed 310
Helix 4
4
A
83 88Right-handed alpha
Helix 5
5
A
91 111Right-handed alpha
Helix 6
6
A
115 124Right-handed alpha
Helix 7
7
A
136 161Right-handed alpha
Helix 8
8
A
165 183Right-handed alpha
Helix 9
9
A
188 196Right-handed alpha
Helix 10
10
A
197 214Right-handed alpha
Helix 11
11
B
2 41Right-handed alpha
Helix 12
12
B
53 74Right-handed alpha
Helix 13
13
B
82 86Right-handed 310
Helix 14
14
B
87 111Right-handed alpha
Helix 15
15
B
115 124Right-handed alpha
Helix 16
16
B
136 161Right-handed alpha
Helix 17
17
B
165 184Right-handed alpha
Helix 18
18
B
188 196Right-handed alpha
Helix 19
19
B
197 214Right-handed alpha
Helix 20
20
C
2 42Right-handed alpha
Helix 21
21
C
53 76Right-handed alpha
Helix 22
22
C
80 82Right-handed 310
Helix 23
23
C
83 88Right-handed alpha
Helix 24
24
C
91 111Right-handed alpha
Helix 25
25
C
115 124Right-handed alpha
Helix 26
26
C
136 161Right-handed alpha
Helix 27
27
C
165 182Right-handed alpha
Helix 28
28
C
189 215Right-handed alpha
Helix 29
29
D
2 44Right-handed alpha
Helix 30
30
D
53 76Right-handed alpha
Helix 31
31
D
80 82Right-handed 310
Helix 32
32
D
83 88Right-handed alpha
Helix 33
33
D
91 111Right-handed alpha
Helix 34
34
D
115 124Right-handed alpha
Helix 35
35
D
136 161Right-handed alpha
Helix 36
36
D
165 183Right-handed alpha
Helix 37
37
D
188 196Right-handed alpha
Helix 38
38
D
197 214Right-handed alpha
Helix 39
39
E
2 43Right-handed alpha
Helix 40
40
E
54 74Right-handed alpha
Helix 41
41
E
74 79Right-handed alpha
Helix 42
42
E
82 86Right-handed 310
Helix 43
43
E
87 111Right-handed alpha
Helix 44
44
E
115 124Right-handed alpha
Helix 45
45
E
136 161Right-handed alpha
Helix 46
46
E
165 184Right-handed alpha
Helix 47
47
E
188 214Right-handed alpha
Helix 48
48
F
2 43Right-handed alpha
Helix 49
49
F
53 76Right-handed alpha
Helix 50
50
F
80 82Right-handed 310
Helix 51
51
F
83 88Right-handed alpha
Helix 52
52
F
91 111Right-handed alpha
Helix 53
53
F
115 124Right-handed alpha
Helix 54
54
F
136 161Right-handed alpha
Helix 55
55
F
165 182Right-handed alpha
Helix 56
56
F
189 215Right-handed alpha
Helix 57
57
G
1 44Right-handed alpha
Helix 58
58
G
53 76Right-handed alpha
Helix 59
59
G
80 82Right-handed 310
Helix 60
60
G
83 88Right-handed alpha
Helix 61
61
G
91 111Right-handed alpha
Helix 62
62
G
115 124Right-handed alpha
Helix 63
63
G
136 161Right-handed alpha
Helix 64
64
G
165 183Right-handed alpha
Helix 65
65
G
188 196Right-handed alpha
Helix 66
66
G
197 214Right-handed alpha
Helix 67
67
H
2 42Right-handed alpha
Helix 68
68
H
53 74Right-handed alpha
Helix 69
69
H
82 86Right-handed 310
Helix 70
70
H
87 111Right-handed alpha
Helix 71
71
H
115 124Right-handed alpha
Helix 72
72
H
136 161Right-handed alpha
Helix 73
73
H
165 182Right-handed alpha
Helix 74
74
H
188 196Right-handed alpha
Helix 75
75
H
197 214Right-handed alpha
Helix 76
76
I
2 42Right-handed alpha
Helix 77
77
I
53 77Right-handed alpha
Helix 78
78
I
80 82Right-handed 310
Helix 79
79
I
83 88Right-handed alpha
Helix 80
80
I
91 111Right-handed alpha
Helix 81
81
I
115 124Right-handed alpha
Helix 82
82
I
136 161Right-handed alpha
Helix 83
83
I
165 182Right-handed alpha
Helix 84
84
I
189 214Right-handed alpha
Helix 85
85
J
32 75Right-handed alpha
Helix 86
86
J
82 109Right-handed alpha
Helix 87
87
J
112 115Right-handed 310
Helix 88
88
J
116 140Right-handed alpha
Helix 89
89
J
144 151Right-handed alpha
Helix 90
90
J
183 208Right-handed alpha
Helix 91
91
J
212 232Right-handed alpha
Helix 92
92
J
236 265Right-handed alpha
Helix 93
93
K
33 75Right-handed alpha
Helix 94
94
K
82 109Right-handed alpha
Helix 95
95
K
112 115Right-handed 310
Helix 96
96
K
116 140Right-handed alpha
Helix 97
97
K
144 151Right-handed alpha
Helix 98
98
K
183 208Right-handed alpha
Helix 99
99
K
212 232Right-handed alpha
Helix 100
100
K
233 235Right-handed 310
Helix 101
101
K
236 265Right-handed alpha
Helix 102
102
L
33 75Right-handed alpha
Helix 103
103
L
82 109Right-handed alpha
Helix 104
104
L
112 115Right-handed 310
Helix 105
105
L
116 140Right-handed alpha
Helix 106
106
L
144 151Right-handed alpha
Helix 107
107
L
183 208Right-handed alpha
Helix 108
108
L
212 232Right-handed alpha
Helix 109
109
L
233 235Right-handed 310
Helix 110
110
L
236 264Right-handed alpha
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There are 2 sheets in PDB entry 3PJA. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
153 154first strand
Strand 2
K
178 179anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
153 154first strand
Strand 2
L
178 179anti-parallel
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