Analysis of interatomic Contacts of Structural Units in PDB entry:
3PJP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PJP entry

There are 2 chains in PDB entry 3PJP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 1251ASN 1444
B
 HIS 1250ASN 1444
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3PJP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1262 1271Right-handed alpha
Helix 2
2
A
1330 1338Right-handed alpha
Helix 3
3
A
1338 1351Right-handed alpha
Helix 4
4
A
1359 1374Right-handed alpha
Helix 5
5
A
1425 1437Right-handed alpha
Helix 6
6
A
1438 1443Right-handed 310
Helix 7
7
B
1262 1271Right-handed alpha
Helix 8
8
B
1330 1338Right-handed alpha
Helix 9
9
B
1338 1351Right-handed alpha
Helix 10
10
B
1359 1374Right-handed alpha
Helix 11
11
B
1425 1437Right-handed alpha
Helix 12
12
B
1439 1443Right-handed 310
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There are 4 sheets in PDB entry 3PJP. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1258 1259first strand
Strand 2
A
1278 1282parallel
Strand 3
A
1289 1297anti-parallel
Strand 4
A
1300 1309anti-parallel
Strand 5
A
1320 1323anti-parallel
Strand 6
A
1326 1328anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1355 1356first strand
Strand 2
A
1379 1384parallel
Strand 3
A
1391 1397anti-parallel
Strand 4
A
1404 1411anti-parallel
Strand 5
A
1416 1418anti-parallel
Strand 6
A
1421 1423anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1278 1282first strand
Strand 2
B
1289 1297anti-parallel
Strand 3
B
1300 1309anti-parallel
Strand 4
B
1320 1323anti-parallel
Strand 5
B
1326 1328anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1379 1384first strand
Strand 2
B
1391 1397anti-parallel
Strand 3
B
1404 1411anti-parallel
Strand 4
B
1416 1418anti-parallel
Strand 5
B
1421 1423anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il