Analysis of interatomic Contacts of Structural Units in PDB entry:
3PJR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PJR entry

There are 3 chains in PDB entry 3PJR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
Y
 G 1 T 15
Z
 C 25 C 34
A
 LEU 4ARG 652
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3PJR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 22Right-handed alpha
Helix 2
2
A
36 51Right-handed alpha
Helix 3
3
A
55 57Right-handed 310
Helix 4
4
A
65 79Right-handed alpha
Helix 5
5
A
92 104Right-handed alpha
Helix 6
6
A
117 132Right-handed alpha
Helix 7
7
A
140 154Right-handed alpha
Helix 8
8
A
158 162Right-handed 310
Helix 9
9
A
167 186Right-handed alpha
Helix 10
10
A
193 206Right-handed alpha
Helix 11
11
A
206 217Right-handed alpha
Helix 12
12
A
224 228Right-handed 310
Helix 13
13
A
229 240Right-handed alpha
Helix 14
14
A
251 255Right-handed 310
Helix 15
15
A
257 261Right-handed 310
Helix 16
16
A
269 274Right-handed alpha
Helix 17
17
A
289 300Right-handed alpha
Helix 18
18
A
328 345Right-handed alpha
Helix 19
19
A
350 352Right-handed 310
Helix 20
20
A
364 374Right-handed alpha
Helix 21
21
A
389 404Right-handed alpha
Helix 22
22
A
407 416Right-handed alpha
Helix 23
23
A
423 433Right-handed alpha
Helix 24
24
A
440 445Right-handed alpha
Helix 25
25
A
455 476Right-handed alpha
Helix 26
26
A
479 491Right-handed alpha
Helix 27
27
A
494 500Right-handed alpha
Helix 28
28
A
504 526Right-handed alpha
Helix 29
29
A
530 541Right-handed alpha
Helix 30
30
A
565 568Right-handed 310
Helix 31
31
A
594 610Right-handed alpha
Helix 32
32
A
635 641Right-handed alpha
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There are 5 sheets in PDB entry 3PJR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
59 63parallel
Strand 3
A
219 222parallel
Strand 4
A
247 249parallel
Strand 5
A
27 30parallel
Strand 6
A
278 281parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 116first strand
Strand 2
A
189 191parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
619 620parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 379first strand
Strand 2
A
559 563parallel
Strand 3
A
354 358parallel
Strand 4
A
572 577parallel
Strand 5
A
611 616parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 625first strand
Strand 2
A
628 631anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il