Analysis of interatomic Contacts of Structural Units in PDB entry:
3PJS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PJS entry

There are 8 chains in PDB entry 3PJS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 1GLU 215
B
GLU 1PRO 224
C
ASP 1GLU 215
D
GLU 1PRO 224
K
SER 22ARG 160
L
SER 22ARG 160
M
SER 22ARG 160
N
SER 22ARG 160
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3PJS. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
185 190Right-handed alpha
Helix 2
2
B
28 30Right-handed 310
Helix 3
3
B
87 91Right-handed 310
Helix 4
4
B
105 109Right-handed 310
Helix 5
5
C
124 128Right-handed 310
Helix 6
6
C
185 190Right-handed alpha
Helix 7
7
D
28 30Right-handed 310
Helix 8
8
D
105 109Right-handed 310
Helix 9
9
K
69 74Right-handed alpha
Helix 10
10
K
92 108Right-handed alpha
Helix 11
11
K
117 156Right-handed alpha
Helix 12
12
L
69 74Right-handed alpha
Helix 13
13
L
92 116Right-handed alpha
Helix 14
14
L
120 135Right-handed alpha
Helix 15
15
L
137 156Right-handed alpha
Helix 16
16
M
64 68Right-handed 310
Helix 17
17
M
69 74Right-handed alpha
Helix 18
18
M
92 109Right-handed alpha
Helix 19
19
M
117 154Right-handed alpha
Helix 20
20
N
64 68Right-handed 310
Helix 21
21
N
69 74Right-handed alpha
Helix 22
22
N
94 108Right-handed alpha
Helix 23
23
N
120 157Right-handed alpha
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There are 19 sheets in PDB entry 3PJS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
4 5first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
70 75anti-parallel
Strand 4
A
62 67anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
10 13first strand
Strand 2
A
104 108parallel
Strand 3
A
85 90anti-parallel
Strand 4
A
33 38anti-parallel
Strand 5
A
44 48anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
117 120first strand
Strand 2
A
131 138anti-parallel
Strand 3
A
178 184anti-parallel
Strand 4
A
161 163anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
146 152first strand
Strand 2
A
193 200anti-parallel
Strand 3
A
208 212anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
4 7first strand
Strand 2
B
18 24anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
71 73anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
11 12first strand
Strand 2
B
118 122parallel
Strand 3
B
92 100anti-parallel
Strand 4
B
32 39anti-parallel
Strand 5
B
45 52anti-parallel
Strand 6
B
57 60anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
147 156first strand
Strand 2
B
187 195anti-parallel
Strand 3
B
174 171anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
147 156first strand
Strand 2
B
187 195anti-parallel
Strand 3
B
180 181anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
161 164first strand
Strand 2
B
208 211anti-parallel
Strand 3
B
216 218anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
205 206first strand
Strand 2
B
221 222anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
4 7first strand
Strand 2
C
19 25anti-parallel
Strand 3
C
70 75anti-parallel
Strand 4
C
62 67anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
10 13first strand
Strand 2
C
104 108parallel
Strand 3
C
85 90anti-parallel
Strand 4
C
33 38anti-parallel
Strand 5
C
44 48anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
117 118first strand
Strand 2
C
131 138anti-parallel
Strand 3
C
177 184anti-parallel
Strand 4
C
161 165anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
146 152first strand
Strand 2
C
193 200anti-parallel
Strand 3
C
208 212anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
4 7first strand
Strand 2
D
18 24anti-parallel
Strand 3
D
78 83anti-parallel
Strand 4
D
71 73anti-parallel
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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
11 12first strand
Strand 2
D
118 122parallel
Strand 3
D
92 100anti-parallel
Strand 4
D
32 39anti-parallel
Strand 5
D
45 52anti-parallel
Strand 6
D
57 60anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
147 156first strand
Strand 2
D
187 195anti-parallel
Strand 3
D
174 171anti-parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
147 156first strand
Strand 2
D
187 195anti-parallel
Strand 3
D
180 181anti-parallel
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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
161 164first strand
Strand 2
D
206 211anti-parallel
Strand 3
D
212 221anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il