Analysis of interatomic Contacts of Structural Units in PDB entry:
3PJT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PJT entry

There are 2 chains in PDB entry 3PJT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 409GLY 648
B
 ASP 409GLY 648
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 3PJT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
409 423Right-handed alpha
Helix 2
2
A
461 471Right-handed alpha
Helix 3
3
A
473 489Right-handed alpha
Helix 4
4
A
490 492Right-handed 310
Helix 5
5
A
501 506Right-handed alpha
Helix 6
6
A
507 520Right-handed alpha
Helix 7
7
A
521 526Right-handed 310
Helix 8
8
A
535 537Right-handed 310
Helix 9
9
A
539 553Right-handed alpha
Helix 10
10
A
565 576Right-handed 310
Helix 11
11
A
584 587Right-handed 310
Helix 12
12
A
593 595Right-handed 310
Helix 13
13
A
596 610Right-handed alpha
Helix 14
14
A
621 631Right-handed alpha
Helix 15
15
A
638 642Right-handed 310
Helix 16
16
B
411 423Right-handed alpha
Helix 17
17
B
461 472Right-handed alpha
Helix 18
18
B
473 489Right-handed alpha
Helix 19
19
B
490 492Right-handed 310
Helix 20
20
B
501 507Right-handed alpha
Helix 21
21
B
507 521Right-handed alpha
Helix 22
22
B
522 525Right-handed 310
Helix 23
23
B
535 537Right-handed 310
Helix 24
24
B
539 553Right-handed alpha
Helix 25
25
B
565 576Right-handed 310
Helix 26
26
B
584 587Right-handed 310
Helix 27
27
B
589 595Right-handed 310
Helix 28
28
B
596 610Right-handed alpha
Helix 29
29
B
621 631Right-handed alpha
Helix 30
30
B
638 642Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 3PJT. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 460first strand
Strand 2
A
438 452anti-parallel
Strand 3
A
426 435anti-parallel
Strand 4
A
645 646anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 460first strand
Strand 2
A
438 452anti-parallel
Strand 3
A
496 499parallel
Strand 4
A
528 533parallel
Strand 5
A
556 562parallel
Strand 6
A
580 582parallel
Strand 7
A
614 616parallel
Strand 8
A
635 636parallel
Strand 9
A
426 435anti-parallel
Strand 10
A
645 646anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
458 460first strand
Strand 2
B
442 452anti-parallel
Strand 3
B
496 499parallel
Strand 4
B
528 533parallel
Strand 5
B
556 562parallel
Strand 6
B
580 582parallel
Strand 7
B
614 616parallel
Strand 8
B
635 636parallel
Strand 9
B
426 435anti-parallel
Strand 10
B
442 452anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il