Analysis of interatomic Contacts of Structural Units in PDB entry:
3PJU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PJU entry

There is 1 chain in PDB entry 3PJU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 400GLY 648
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3PJU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
409 423Right-handed alpha
Helix 2
2
A
461 471Right-handed alpha
Helix 3
3
A
473 489Right-handed alpha
Helix 4
4
A
490 492Right-handed 310
Helix 5
5
A
501 507Right-handed alpha
Helix 6
6
A
507 521Right-handed alpha
Helix 7
7
A
522 526Right-handed 310
Helix 8
8
A
535 537Right-handed 310
Helix 9
9
A
539 554Right-handed alpha
Helix 10
10
A
565 573Right-handed 310
Helix 11
11
A
584 587Right-handed 310
Helix 12
12
A
589 595Right-handed 310
Helix 13
13
A
596 610Right-handed alpha
Helix 14
14
A
621 631Right-handed alpha
Helix 15
15
A
638 642Right-handed 310
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There is 1 sheet ( A) in PDB entry 3PJU.

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 460first strand
Strand 2
A
442 452anti-parallel
Strand 3
A
496 499parallel
Strand 4
A
528 533parallel
Strand 5
A
556 562parallel
Strand 6
A
580 582parallel
Strand 7
A
614 616parallel
Strand 8
A
635 636parallel
Strand 9
A
426 435anti-parallel
Strand 10
A
442 452anti-parallel
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