Analysis of interatomic Contacts of Structural Units in PDB entry:
3PJX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PJX entry

There is 1 chain in PDB entry 3PJX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 219GLY 648
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3PJX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
219 238Right-handed alpha
Helix 2
2
A
246 257Right-handed alpha
Helix 3
3
A
276 285Right-handed alpha
Helix 4
4
A
285 306Right-handed alpha
Helix 5
5
A
307 311Right-handed 310
Helix 6
6
A
330 351Right-handed alpha
Helix 7
7
A
372 389Right-handed alpha
Helix 8
8
A
409 423Right-handed alpha
Helix 9
9
A
460 472Right-handed alpha
Helix 10
10
A
473 490Right-handed alpha
Helix 11
11
A
501 507Right-handed alpha
Helix 12
12
A
507 520Right-handed alpha
Helix 13
13
A
521 526Right-handed 310
Helix 14
14
A
535 537Right-handed 310
Helix 15
15
A
539 554Right-handed alpha
Helix 16
16
A
565 570Right-handed alpha
Helix 17
17
A
571 576Right-handed alpha
Helix 18
18
A
584 587Right-handed 310
Helix 19
19
A
593 609Right-handed alpha
Helix 20
20
A
621 631Right-handed alpha
Helix 21
21
A
638 642Right-handed 310
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There are 2 sheets in PDB entry 3PJX. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 318first strand
Strand 2
A
321 327anti-parallel
Strand 3
A
267 274anti-parallel
Strand 4
A
360 367anti-parallel
Strand 5
A
395 397parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 459first strand
Strand 2
A
438 452anti-parallel
Strand 3
A
496 499parallel
Strand 4
A
528 533parallel
Strand 5
A
556 562parallel
Strand 6
A
580 582parallel
Strand 7
A
614 616parallel
Strand 8
A
635 636parallel
Strand 9
A
426 435anti-parallel
Strand 10
A
438 452anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il