Analysis of interatomic Contacts of Structural Units in PDB entry:
3PKY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PKY entry

There are 4 chains in PDB entry 3PKY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6PRO 292
B
 GLN 7PRO 292
C
 G 1 C 5
D
 C 2 A 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3PKY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 41Right-handed alpha
Helix 2
2
A
42 44Right-handed 310
Helix 3
3
A
95 105Right-handed alpha
Helix 4
4
A
145 162Right-handed alpha
Helix 5
5
A
188 207Right-handed alpha
Helix 6
6
A
228 232Right-handed 310
Helix 7
7
A
256 261Right-handed alpha
Helix 8
8
A
270 281Right-handed alpha
Helix 9
9
B
26 36Right-handed alpha
Helix 10
10
B
36 45Right-handed alpha
Helix 11
11
B
95 105Right-handed alpha
Helix 12
12
B
145 162Right-handed alpha
Helix 13
13
B
188 207Right-handed alpha
Helix 14
14
B
228 232Right-handed 310
Helix 15
15
B
256 262Right-handed 310
Helix 16
16
B
270 281Right-handed alpha
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There are 12 sheets in PDB entry 3PKY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 19first strand
Strand 2
A
24 25anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
50 53anti-parallel
Strand 3
A
109 112anti-parallel
Strand 4
A
237 238anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 82first strand
Strand 2
A
87 92anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 119first strand
Strand 2
A
126 140anti-parallel
Strand 3
A
224 227anti-parallel
Strand 4
A
211 212parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 119first strand
Strand 2
A
126 140anti-parallel
Strand 3
A
177 187anti-parallel
Strand 4
A
168 171anti-parallel
Strand 5
A
253 254anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 251first strand
Strand 2
A
268 269anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 19first strand
Strand 2
B
24 25anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 65first strand
Strand 2
B
50 53anti-parallel
Strand 3
B
109 112anti-parallel
Strand 4
B
237 238anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 82first strand
Strand 2
B
87 92anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 119first strand
Strand 2
B
126 140anti-parallel
Strand 3
B
224 227anti-parallel
Strand 4
B
211 212parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 119first strand
Strand 2
B
126 140anti-parallel
Strand 3
B
177 187anti-parallel
Strand 4
B
168 171anti-parallel
Strand 5
B
253 254anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
250 251first strand
Strand 2
B
268 269anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il