Analysis of interatomic Contacts of Structural Units in PDB entry:
3PL0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PL0 entry

There are 2 chains in PDB entry 3PL0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0ALA 253
B
 GLY 0ALA 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3PL0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 22Right-handed alpha
Helix 2
2
A
27 36Right-handed alpha
Helix 3
3
A
38 44Right-handed alpha
Helix 4
4
A
45 51Right-handed 310
Helix 5
5
A
110 115Right-handed alpha
Helix 6
6
A
116 134Right-handed alpha
Helix 7
7
A
136 138Right-handed 310
Helix 8
8
B
10 22Right-handed alpha
Helix 9
9
B
27 36Right-handed alpha
Helix 10
10
B
38 44Right-handed alpha
Helix 11
11
B
45 51Right-handed 310
Helix 12
12
B
110 115Right-handed alpha
Helix 13
13
B
116 132Right-handed alpha
Helix 14
14
B
136 138Right-handed 310
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There are 9 sheets in PDB entry 3PL0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
208 212anti-parallel
Strand 3
A
171 180anti-parallel
Strand 4
A
236 245anti-parallel
Strand 5
A
140 151anti-parallel
Strand 6
A
64 67anti-parallel
Strand 7
A
53 54anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
208 212anti-parallel
Strand 3
A
171 180anti-parallel
Strand 4
A
236 245anti-parallel
Strand 5
A
140 151anti-parallel
Strand 6
A
70 75anti-parallel
Strand 7
A
80 83anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
102 104anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 184first strand
Strand 2
A
223 225anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 220first strand
Strand 2
A
187 191anti-parallel
Strand 3
A
196 200anti-parallel
Strand 4
B
196 200anti-parallel
Strand 5
B
187 191anti-parallel
Strand 6
B
216 220anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 26first strand
Strand 2
B
207 212anti-parallel
Strand 3
B
171 180anti-parallel
Strand 4
B
236 245anti-parallel
Strand 5
B
140 151anti-parallel
Strand 6
B
65 67anti-parallel
Strand 7
B
53 54anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 26first strand
Strand 2
B
207 212anti-parallel
Strand 3
B
171 180anti-parallel
Strand 4
B
236 245anti-parallel
Strand 5
B
140 151anti-parallel
Strand 6
B
70 75anti-parallel
Strand 7
B
80 83anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 92first strand
Strand 2
B
101 104anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 184first strand
Strand 2
B
223 225anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il