Analysis of interatomic Contacts of Structural Units in PDB entry:
3PL5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PL5 entry

There is 1 chain in PDB entry 3PL5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ARG 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3PL5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 12Right-handed 310
Helix 2
2
A
14 22Right-handed alpha
Helix 3
3
A
46 56Right-handed alpha
Helix 4
4
A
66 80Right-handed alpha
Helix 5
5
A
95 111Right-handed alpha
Helix 6
6
A
124 141Right-handed alpha
Helix 7
7
A
144 156Right-handed alpha
Helix 8
8
A
168 174Right-handed alpha
Helix 9
9
A
210 223Right-handed alpha
Helix 10
10
A
238 251Right-handed alpha
Helix 11
11
A
264 272Right-handed alpha
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There are 3 sheets in PDB entry 3PL5. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
4 8parallel
Strand 3
A
84 88parallel
Strand 4
A
116 120parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
29 32anti-parallel
Strand 3
A
61 63anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 209first strand
Strand 2
A
190 196anti-parallel
Strand 3
A
159 164anti-parallel
Strand 4
A
276 281anti-parallel
Strand 5
A
230 235anti-parallel
Strand 6
A
257 262parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il