Analysis of interatomic Contacts of Structural Units in PDB entry:
3PLN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PLN entry

There is 1 chain in PDB entry 3PLN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 996GLY 386
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 3PLN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 21Right-handed alpha
Helix 2
2
A
31 40Right-handed alpha
Helix 3
3
A
47 57Right-handed alpha
Helix 4
4
A
66 72Right-handed alpha
Helix 5
5
A
94 108Right-handed alpha
Helix 6
6
A
122 132Right-handed alpha
Helix 7
7
A
147 154Right-handed alpha
Helix 8
8
A
164 178Right-handed alpha
Helix 9
9
A
189 222Right-handed alpha
Helix 10
10
A
224 234Right-handed alpha
Helix 11
11
A
253 265Right-handed alpha
Helix 12
12
A
271 293Right-handed alpha
Helix 13
13
A
316 328Right-handed alpha
Helix 14
14
A
352 360Right-handed alpha
Helix 15
15
A
369 377Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 3PLN. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 64first strand
Strand 2
A
24 28parallel
Strand 3
A
2 6parallel
Strand 4
A
76 79parallel
Strand 5
A
112 115parallel
Strand 6
A
136 138parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
A
91 93anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 160first strand
Strand 2
A
185 187parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 344first strand
Strand 2
A
347 349anti-parallel
Strand 3
A
332 335parallel
Strand 4
A
299 302parallel
Strand 5
A
362 364parallel
Strand 6
A
379 380parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il