Analysis of interatomic Contacts of Structural Units in PDB entry:
3PM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PM5 entry

There are 3 chains in PDB entry 3PM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3TRP 474
B
 SER 5TRP 474
C
 MET 1ASP 268
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 3PM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 16Right-handed 310
Helix 2
2
A
17 39Right-handed alpha
Helix 3
3
A
68 72Right-handed 310
Helix 4
4
A
105 128Right-handed alpha
Helix 5
5
A
129 134Right-handed 310
Helix 6
6
A
136 165Right-handed alpha
Helix 7
7
A
165 176Right-handed alpha
Helix 8
8
A
190 194Right-handed 310
Helix 9
9
A
199 222Right-handed alpha
Helix 10
10
A
226 266Right-handed alpha
Helix 11
11
A
269 276Right-handed alpha
Helix 12
12
A
280 297Right-handed alpha
Helix 13
13
A
298 300Right-handed 310
Helix 14
14
A
304 313Right-handed alpha
Helix 15
15
A
320 324Right-handed 310
Helix 16
16
A
355 382Right-handed alpha
Helix 17
17
A
415 423Right-handed alpha
Helix 18
18
A
424 426Right-handed 310
Helix 19
19
A
429 439Right-handed alpha
Helix 20
20
B
13 16Right-handed 310
Helix 21
21
B
17 39Right-handed alpha
Helix 22
22
B
70 72Right-handed 310
Helix 23
23
B
102 104Right-handed 310
Helix 24
24
B
105 128Right-handed alpha
Helix 25
25
B
129 134Right-handed 310
Helix 26
26
B
136 165Right-handed alpha
Helix 27
27
B
165 179Right-handed alpha
Helix 28
28
B
190 194Right-handed 310
Helix 29
29
B
199 210Right-handed alpha
Helix 30
30
B
210 222Right-handed alpha
Helix 31
31
B
226 266Right-handed alpha
Helix 32
32
B
269 276Right-handed alpha
Helix 33
33
B
280 297Right-handed alpha
Helix 34
34
B
298 300Right-handed 310
Helix 35
35
B
304 313Right-handed alpha
Helix 36
36
B
320 324Right-handed 310
Helix 37
37
B
355 382Right-handed alpha
Helix 38
38
B
415 423Right-handed alpha
Helix 39
39
B
424 426Right-handed 310
Helix 40
40
B
429 439Right-handed alpha
Helix 41
41
C
13 16Right-handed 310
Helix 42
42
C
17 39Right-handed alpha
Helix 43
43
C
70 72Right-handed 310
Helix 44
44
C
102 104Right-handed 310
Helix 45
45
C
105 128Right-handed alpha
Helix 46
46
C
129 134Right-handed 310
Helix 47
47
C
136 165Right-handed alpha
Helix 48
48
C
165 176Right-handed alpha
Helix 49
49
C
190 194Right-handed 310
Helix 50
50
C
199 210Right-handed alpha
Helix 51
51
C
210 222Right-handed alpha
Helix 52
52
C
226 266Right-handed alpha
Helix 53
53
C
269 276Right-handed alpha
Helix 54
54
C
280 298Right-handed alpha
Helix 55
55
C
304 313Right-handed alpha
Helix 56
56
C
320 324Right-handed 310
Helix 57
57
C
355 382Right-handed alpha
Helix 58
58
C
415 423Right-handed alpha
Helix 59
59
C
424 426Right-handed 310
Helix 60
60
C
429 440Right-handed alpha
Helix 61
61
D
13 16Right-handed 310
Helix 62
62
D
17 39Right-handed alpha
Helix 63
63
D
70 72Right-handed 310
Helix 64
64
D
102 104Right-handed 310
Helix 65
65
D
105 128Right-handed alpha
Helix 66
66
D
129 134Right-handed 310
Helix 67
67
D
136 165Right-handed alpha
Helix 68
68
D
165 176Right-handed alpha
Helix 69
69
D
190 194Right-handed 310
Helix 70
70
D
199 210Right-handed alpha
Helix 71
71
D
210 222Right-handed alpha
Helix 72
72
D
226 266Right-handed alpha
Helix 73
73
D
269 276Right-handed alpha
Helix 74
74
D
280 297Right-handed alpha
Helix 75
75
D
298 300Right-handed 310
Helix 76
76
D
304 313Right-handed alpha
Helix 77
77
D
320 324Right-handed 310
Helix 78
78
D
355 382Right-handed alpha
Helix 79
79
D
415 423Right-handed alpha
Helix 80
80
D
424 426Right-handed 310
Helix 81
81
D
429 439Right-handed alpha
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There are 12 sheets in PDB entry 3PM5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 67first strand
Strand 2
A
47 53anti-parallel
Strand 3
A
470 471anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 341first strand
Strand 2
A
344 351anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 407first strand
Strand 2
A
413 414anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 68first strand
Strand 2
B
47 53anti-parallel
Strand 3
B
470 471anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
334 341first strand
Strand 2
B
344 351anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
406 407first strand
Strand 2
B
413 414anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 68first strand
Strand 2
C
47 53anti-parallel
Strand 3
C
470 471anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
334 341first strand
Strand 2
C
344 351anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
406 407first strand
Strand 2
C
413 414anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
62 68first strand
Strand 2
D
47 53anti-parallel
Strand 3
D
470 471anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
334 341first strand
Strand 2
D
344 351anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
406 407first strand
Strand 2
D
413 414anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il