Analysis of interatomic Contacts of Structural Units in PDB entry:
3PM6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PM6 entry

There are 2 chains in PDB entry 3PM6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 6MET 298
B
 PRO 4MET 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3PM6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 21Right-handed alpha
Helix 2
2
A
32 46Right-handed alpha
Helix 3
3
A
55 63Right-handed alpha
Helix 4
4
A
64 77Right-handed alpha
Helix 5
5
A
90 100Right-handed alpha
Helix 6
6
A
121 138Right-handed alpha
Helix 7
7
A
169 178Right-handed alpha
Helix 8
8
A
203 215Right-handed alpha
Helix 9
9
A
229 239Right-handed alpha
Helix 10
10
A
247 262Right-handed alpha
Helix 11
11
A
266 289Right-handed alpha
Helix 12
12
A
293 298Right-handed 310
Helix 13
13
B
11 21Right-handed alpha
Helix 14
14
B
32 46Right-handed alpha
Helix 15
15
B
55 63Right-handed alpha
Helix 16
16
B
64 77Right-handed alpha
Helix 17
17
B
90 100Right-handed alpha
Helix 18
18
B
121 138Right-handed alpha
Helix 19
19
B
169 178Right-handed alpha
Helix 20
20
B
203 215Right-handed alpha
Helix 21
21
B
229 239Right-handed alpha
Helix 22
22
B
247 262Right-handed alpha
Helix 23
23
B
266 289Right-handed alpha
Helix 24
24
B
293 298Right-handed 310
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There are 2 sheets in PDB entry 3PM6. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 29first strand
Strand 2
A
50 54parallel
Strand 3
A
81 88parallel
Strand 4
A
112 115parallel
Strand 5
A
142 145parallel
Strand 6
A
183 184parallel
Strand 7
A
219 222parallel
Strand 8
A
241 246parallel
Strand 9
A
25 29parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 29first strand
Strand 2
B
50 54parallel
Strand 3
B
81 88parallel
Strand 4
B
112 115parallel
Strand 5
B
142 145parallel
Strand 6
B
183 184parallel
Strand 7
B
219 222parallel
Strand 8
B
241 246parallel
Strand 9
B
25 29parallel
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