Analysis of interatomic Contacts of Structural Units in PDB entry:
3PM8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PM8 entry

There are 2 chains in PDB entry 3PM8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 333LYS 512
B
 GLN 333LYS 512
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3PM8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
341 349Right-handed alpha
Helix 2
2
A
353 367Right-handed alpha
Helix 3
3
A
368 383Right-handed alpha
Helix 4
4
A
391 403Right-handed alpha
Helix 5
5
A
408 417Right-handed alpha
Helix 6
6
A
428 434Right-handed alpha
Helix 7
7
A
437 442Right-handed alpha
Helix 8
8
A
443 455Right-handed alpha
Helix 9
9
A
463 472Right-handed alpha
Helix 10
10
A
478 493Right-handed alpha
Helix 11
11
A
502 511Right-handed alpha
Helix 12
12
B
340 349Right-handed alpha
Helix 13
13
B
350 352Right-handed 310
Helix 14
14
B
353 367Right-handed alpha
Helix 15
15
B
368 383Right-handed alpha
Helix 16
16
B
391 402Right-handed alpha
Helix 17
17
B
408 420Right-handed alpha
Helix 18
18
B
428 436Right-handed alpha
Helix 19
19
B
437 442Right-handed alpha
Helix 20
20
B
443 455Right-handed alpha
Helix 21
21
B
463 472Right-handed alpha
Helix 22
22
B
478 493Right-handed alpha
Helix 23
23
B
502 511Right-handed alpha
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There are 4 sheets in PDB entry 3PM8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 390first strand
Strand 2
A
426 427anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 462first strand
Strand 2
A
500 501anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
389 390first strand
Strand 2
B
426 427anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
461 462first strand
Strand 2
B
500 501anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il