Analysis of interatomic Contacts of Structural Units in PDB entry:
3PM9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3PM9 entry

There are 3 chains in PDB entry 3PM9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 11	VAL 475
B	THR 11	VAL 475
C	THR 11	HIS 413

There are119 helices in PDB entry 3PM9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	13	25	Right-handed alpha
Helix 2	2	A	32	41	Right-handed alpha
Helix 3	3	A	59	74	Right-handed alpha
Helix 4	4	A	124	135	Right-handed alpha
Helix 5	5	A	150	158	Right-handed alpha
Helix 6	6	A	163	168	Right-handed alpha
Helix 7	7	A	169	173	Right-handed alpha
Helix 8	8	A	202	207	Right-handed alpha
Helix 9	9	A	239	255	Right-handed alpha
Helix 10	10	A	266	276	Right-handed alpha
Helix 11	11	A	300	315	Right-handed alpha
Helix 12	12	A	326	339	Right-handed alpha
Helix 13	13	A	339	344	Right-handed alpha
Helix 14	14	A	345	348	Right-handed 310
Helix 15	15	A	358	360	Right-handed 310
Helix 16	16	A	361	377	Right-handed alpha
Helix 17	17	A	404	410	Right-handed alpha
Helix 18	18	A	411	426	Right-handed alpha
Helix 19	19	A	440	448	Right-handed alpha
Helix 20	20	A	449	464	Right-handed alpha
Helix 21	21	B	13	25	Right-handed alpha
Helix 22	22	B	32	37	Right-handed alpha
Helix 23	23	B	59	74	Right-handed alpha
Helix 24	24	B	124	135	Right-handed alpha
Helix 25	25	B	150	158	Right-handed alpha
Helix 26	26	B	163	168	Right-handed alpha
Helix 27	27	B	169	173	Right-handed alpha
Helix 28	28	B	202	207	Right-handed alpha
Helix 29	29	B	239	255	Right-handed alpha
Helix 30	30	B	266	277	Right-handed alpha
Helix 31	31	B	300	315	Right-handed alpha
Helix 32	32	B	326	339	Right-handed alpha
Helix 33	33	B	339	344	Right-handed alpha
Helix 34	34	B	345	348	Right-handed 310
Helix 35	35	B	358	360	Right-handed 310
Helix 36	36	B	361	377	Right-handed alpha
Helix 37	37	B	404	410	Right-handed alpha
Helix 38	38	B	411	426	Right-handed alpha
Helix 39	39	B	440	448	Right-handed alpha
Helix 40	40	B	449	464	Right-handed alpha
Helix 41	41	C	13	25	Right-handed alpha
Helix 42	42	C	32	41	Right-handed alpha
Helix 43	43	C	59	74	Right-handed alpha
Helix 44	44	C	124	135	Right-handed alpha
Helix 45	45	C	150	158	Right-handed alpha
Helix 46	46	C	163	168	Right-handed alpha
Helix 47	47	C	169	173	Right-handed alpha
Helix 48	48	C	202	207	Right-handed alpha
Helix 49	49	C	239	255	Right-handed alpha
Helix 50	50	C	266	276	Right-handed alpha
Helix 51	51	C	300	315	Right-handed alpha
Helix 52	52	C	326	339	Right-handed alpha
Helix 53	53	C	339	344	Right-handed alpha
Helix 54	54	C	345	348	Right-handed 310
Helix 55	55	C	358	360	Right-handed 310
Helix 56	56	C	361	377	Right-handed alpha
Helix 57	57	C	404	410	Right-handed alpha
Helix 58	58	C	411	426	Right-handed alpha
Helix 59	59	C	440	448	Right-handed alpha
Helix 60	60	C	449	464	Right-handed alpha
Helix 61	61	D	13	25	Right-handed alpha
Helix 62	62	D	32	37	Right-handed alpha
Helix 63	63	D	59	73	Right-handed alpha
Helix 64	64	D	124	135	Right-handed alpha
Helix 65	65	D	150	158	Right-handed alpha
Helix 66	66	D	163	168	Right-handed alpha
Helix 67	67	D	169	173	Right-handed alpha
Helix 68	68	D	202	207	Right-handed alpha
Helix 69	69	D	239	255	Right-handed alpha
Helix 70	70	D	266	277	Right-handed alpha
Helix 71	71	D	300	315	Right-handed alpha
Helix 72	72	D	326	339	Right-handed alpha
Helix 73	73	D	339	344	Right-handed alpha
Helix 74	74	D	345	348	Right-handed 310
Helix 75	75	D	358	360	Right-handed 310
Helix 76	76	D	361	377	Right-handed alpha
Helix 77	77	D	404	410	Right-handed alpha
Helix 78	78	D	411	426	Right-handed alpha
Helix 79	79	D	440	448	Right-handed alpha
Helix 80	80	D	449	464	Right-handed alpha
Helix 81	81	E	13	25	Right-handed alpha
Helix 82	82	E	32	41	Right-handed alpha
Helix 83	83	E	59	74	Right-handed alpha
Helix 84	84	E	124	135	Right-handed alpha
Helix 85	85	E	150	158	Right-handed alpha
Helix 86	86	E	163	168	Right-handed alpha
Helix 87	87	E	169	173	Right-handed alpha
Helix 88	88	E	202	207	Right-handed alpha
Helix 89	89	E	239	255	Right-handed alpha
Helix 90	90	E	266	276	Right-handed alpha
Helix 91	91	E	300	315	Right-handed alpha
Helix 92	92	E	326	339	Right-handed alpha
Helix 93	93	E	341	348	Right-handed 310
Helix 94	94	E	358	360	Right-handed 310
Helix 95	95	E	361	377	Right-handed alpha
Helix 96	96	E	404	410	Right-handed alpha
Helix 97	97	E	411	426	Right-handed alpha
Helix 98	98	E	440	448	Right-handed alpha
Helix 99	99	E	449	464	Right-handed alpha
Helix 100	100	F	13	25	Right-handed alpha
Helix 101	101	F	32	41	Right-handed alpha
Helix 102	102	F	59	74	Right-handed alpha
Helix 103	103	F	124	135	Right-handed alpha
Helix 104	104	F	150	158	Right-handed alpha
Helix 105	105	F	163	168	Right-handed alpha
Helix 106	106	F	169	173	Right-handed alpha
Helix 107	107	F	202	207	Right-handed alpha
Helix 108	108	F	239	255	Right-handed alpha
Helix 109	109	F	266	277	Right-handed alpha
Helix 110	110	F	300	315	Right-handed alpha
Helix 111	111	F	326	339	Right-handed alpha
Helix 112	112	F	339	345	Right-handed alpha
Helix 113	113	F	346	348	Right-handed 310
Helix 114	114	F	358	360	Right-handed 310
Helix 115	115	F	361	377	Right-handed alpha
Helix 116	116	F	404	411	Right-handed alpha
Helix 117	117	F	411	426	Right-handed alpha
Helix 118	118	F	440	448	Right-handed alpha
Helix 119	119	F	449	464	Right-handed alpha

There are 28 sheets in PDB entry 3PM9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	30	first strand
Strand 2	A	54	55	anti-parallel
Strand 3	A	97	100	parallel
Strand 4	A	77	80	parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	111	first strand
Strand 2	A	116	120	anti-parallel
Strand 3	A	215	222	anti-parallel
Strand 4	A	174	180	anti-parallel
Strand 5	A	186	188	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	138	first strand
Strand 2	A	224	225	anti-parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	323	first strand
Strand 2	A	229	237	anti-parallel
Strand 3	A	288	296	anti-parallel
Strand 4	A	258	265	anti-parallel
Strand 5	A	381	387	anti-parallel
Strand 6	A	392	398	anti-parallel
Strand 7	A	350	351	anti-parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	323	first strand
Strand 2	A	229	237	anti-parallel
Strand 3	A	288	296	anti-parallel
Strand 4	A	258	265	anti-parallel
Strand 5	A	381	387	anti-parallel
Strand 6	A	392	398	anti-parallel
Strand 7	A	354	356	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	30	first strand
Strand 2	B	54	55	anti-parallel
Strand 3	B	97	100	parallel
Strand 4	B	77	80	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	111	first strand
Strand 2	B	116	120	anti-parallel
Strand 3	B	215	222	anti-parallel
Strand 4	B	174	180	anti-parallel
Strand 5	B	186	188	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	138	first strand
Strand 2	B	224	225	anti-parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	320	323	first strand
Strand 2	B	229	237	anti-parallel
Strand 3	B	288	296	anti-parallel
Strand 4	B	258	265	anti-parallel
Strand 5	B	381	387	anti-parallel
Strand 6	B	392	398	anti-parallel
Strand 7	B	350	351	anti-parallel

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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	320	323	first strand
Strand 2	B	229	237	anti-parallel
Strand 3	B	288	296	anti-parallel
Strand 4	B	258	265	anti-parallel
Strand 5	B	381	387	anti-parallel
Strand 6	B	392	398	anti-parallel
Strand 7	B	354	356	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	30	first strand
Strand 2	C	53	55	anti-parallel
Strand 3	C	97	100	parallel
Strand 4	C	77	80	parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	111	first strand
Strand 2	C	116	120	anti-parallel
Strand 3	C	215	222	anti-parallel
Strand 4	C	174	180	anti-parallel
Strand 5	C	186	188	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	138	first strand
Strand 2	C	224	225	anti-parallel

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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	320	323	first strand
Strand 2	C	229	237	anti-parallel
Strand 3	C	288	296	anti-parallel
Strand 4	C	258	265	anti-parallel
Strand 5	C	381	387	anti-parallel
Strand 6	C	392	398	anti-parallel
Strand 7	C	350	356	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	30	first strand
Strand 2	D	54	55	anti-parallel
Strand 3	D	97	100	parallel
Strand 4	D	77	80	parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	111	first strand
Strand 2	D	116	120	anti-parallel
Strand 3	D	215	222	anti-parallel
Strand 4	D	174	180	anti-parallel
Strand 5	D	186	188	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	138	first strand
Strand 2	D	224	225	anti-parallel

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There are 7 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	320	323	first strand
Strand 2	D	229	237	anti-parallel
Strand 3	D	288	296	anti-parallel
Strand 4	D	258	265	anti-parallel
Strand 5	D	381	387	anti-parallel
Strand 6	D	392	398	anti-parallel
Strand 7	D	350	351	anti-parallel

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There are 7 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	320	323	first strand
Strand 2	D	229	237	anti-parallel
Strand 3	D	288	296	anti-parallel
Strand 4	D	258	265	anti-parallel
Strand 5	D	381	387	anti-parallel
Strand 6	D	392	398	anti-parallel
Strand 7	D	354	356	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	30	first strand
Strand 2	E	53	55	anti-parallel
Strand 3	E	97	100	parallel
Strand 4	E	77	80	parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	107	111	first strand
Strand 2	E	116	120	anti-parallel
Strand 3	E	215	222	anti-parallel
Strand 4	E	174	180	anti-parallel
Strand 5	E	186	188	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	138	first strand
Strand 2	E	224	225	anti-parallel

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There are 7 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	320	323	first strand
Strand 2	E	229	237	anti-parallel
Strand 3	E	288	296	anti-parallel
Strand 4	E	258	265	anti-parallel
Strand 5	E	381	387	anti-parallel
Strand 6	E	392	398	anti-parallel
Strand 7	E	350	351	anti-parallel

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There are 7 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	320	323	first strand
Strand 2	E	229	237	anti-parallel
Strand 3	E	288	296	anti-parallel
Strand 4	E	258	265	anti-parallel
Strand 5	E	381	387	anti-parallel
Strand 6	E	392	398	anti-parallel
Strand 7	E	354	356	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	30	first strand
Strand 2	F	54	55	anti-parallel
Strand 3	F	97	100	parallel
Strand 4	F	77	80	parallel

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There are 5 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	107	111	first strand
Strand 2	F	116	120	anti-parallel
Strand 3	F	215	222	anti-parallel
Strand 4	F	174	180	anti-parallel
Strand 5	F	186	188	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	137	138	first strand
Strand 2	F	224	225	anti-parallel

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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	320	323	first strand
Strand 2	F	229	237	anti-parallel
Strand 3	F	288	296	anti-parallel
Strand 4	F	258	265	anti-parallel
Strand 5	F	381	387	anti-parallel
Strand 6	F	392	398	anti-parallel
Strand 7	F	350	356	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3PM9

Analysis of interatomic Contacts of Structural Units in PDB entry:
3PM9