Analysis of interatomic Contacts of Structural Units in PDB entry:
3PME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PME entry

There is 1 chain in PDB entry 3PME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 868HIS 1284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3PME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
868 870Right-handed 310
Helix 2
2
A
923 928Right-handed 310
Helix 3
3
A
929 932Right-handed 310
Helix 4
4
A
944 949Right-handed alpha
Helix 5
5
A
1072 1085Right-handed alpha
Helix 6
6
A
1180 1184Right-handed 310
Helix 7
7
A
1204 1208Right-handed 310
Helix 8
8
A
1258 1262Right-handed 310
Helix 9
9
A
1264 1267Right-handed 310
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There are 6 sheets in PDB entry 3PME. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
882 885first strand
Strand 2
A
872 879anti-parallel
Strand 3
A
1059 1067anti-parallel
Strand 4
A
908 911anti-parallel
Strand 5
A
900 901anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
882 885first strand
Strand 2
A
872 879anti-parallel
Strand 3
A
1059 1067anti-parallel
Strand 4
A
934 943anti-parallel
Strand 5
A
1007 1014anti-parallel
Strand 6
A
1018 1023anti-parallel
Strand 7
A
1026 1032anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
892 896first strand
Strand 2
A
917 921anti-parallel
Strand 3
A
1044 1047anti-parallel
Strand 4
A
953 961anti-parallel
Strand 5
A
964 971anti-parallel
Strand 6
A
974 980anti-parallel
Strand 7
A
986 992anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1104 1107first strand
Strand 2
A
1269 1272anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1113 1118first strand
Strand 2
A
1121 1126anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1139 1143first strand
Strand 2
A
1158 1165anti-parallel
Strand 3
A
1209 1213anti-parallel
Strand 4
A
1222 1226anti-parallel
Strand 5
A
1232 1239anti-parallel
Strand 6
A
1249 1255anti-parallel
Strand 7
A
1192 1198anti-parallel
Strand 8
A
1168 1174anti-parallel
Strand 9
A
1158 1165anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il