Analysis of interatomic Contacts of Structural Units in PDB entry:
3PMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PMK entry

There are 4 chains in PDB entry 3PMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 19LYS 422
B
 GLY 19LYS 422
C
 GLY 19LYS 422
D
 GLY 19TYR 72
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are112 helices in PDB entry 3PMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 35Right-handed alpha
Helix 2
2
A
47 62Right-handed alpha
Helix 3
3
A
65 77Right-handed alpha
Helix 4
4
A
103 107Right-handed 310
Helix 5
5
A
129 147Right-handed alpha
Helix 6
6
A
149 168Right-handed alpha
Helix 7
7
A
184 187Right-handed 310
Helix 8
8
A
188 205Right-handed alpha
Helix 9
9
A
210 212Right-handed 310
Helix 10
10
A
213 218Right-handed alpha
Helix 11
11
A
219 221Right-handed 310
Helix 12
12
A
225 239Right-handed alpha
Helix 13
13
A
241 248Right-handed alpha
Helix 14
14
A
251 262Right-handed alpha
Helix 15
15
A
274 278Right-handed 310
Helix 16
16
A
294 308Right-handed alpha
Helix 17
17
A
312 316Right-handed 310
Helix 18
18
A
323 341Right-handed alpha
Helix 19
19
A
374 385Right-handed alpha
Helix 20
20
A
390 402Right-handed alpha
Helix 21
21
A
411 421Right-handed alpha
Helix 22
22
B
27 35Right-handed alpha
Helix 23
23
B
47 62Right-handed alpha
Helix 24
24
B
65 77Right-handed alpha
Helix 25
25
B
103 107Right-handed 310
Helix 26
26
B
133 145Right-handed alpha
Helix 27
27
B
149 168Right-handed alpha
Helix 28
28
B
183 187Right-handed 310
Helix 29
29
B
188 205Right-handed alpha
Helix 30
30
B
210 212Right-handed 310
Helix 31
31
B
213 218Right-handed alpha
Helix 32
32
B
219 221Right-handed 310
Helix 33
33
B
225 239Right-handed alpha
Helix 34
34
B
241 248Right-handed alpha
Helix 35
35
B
251 262Right-handed alpha
Helix 36
36
B
274 278Right-handed 310
Helix 37
37
B
294 308Right-handed alpha
Helix 38
38
B
312 316Right-handed 310
Helix 39
39
B
323 341Right-handed alpha
Helix 40
40
B
374 385Right-handed alpha
Helix 41
41
B
390 402Right-handed alpha
Helix 42
42
B
411 421Right-handed alpha
Helix 43
43
C
27 32Right-handed alpha
Helix 44
44
C
47 62Right-handed alpha
Helix 45
45
C
65 77Right-handed alpha
Helix 46
46
C
103 107Right-handed 310
Helix 47
47
C
129 132Right-handed 310
Helix 48
48
C
133 145Right-handed alpha
Helix 49
49
C
149 166Right-handed alpha
Helix 50
50
C
183 187Right-handed 310
Helix 51
51
C
188 205Right-handed alpha
Helix 52
52
C
210 212Right-handed 310
Helix 53
53
C
213 218Right-handed alpha
Helix 54
54
C
219 221Right-handed 310
Helix 55
55
C
225 239Right-handed alpha
Helix 56
56
C
241 248Right-handed alpha
Helix 57
57
C
251 262Right-handed alpha
Helix 58
58
C
274 278Right-handed 310
Helix 59
59
C
294 308Right-handed alpha
Helix 60
60
C
312 316Right-handed 310
Helix 61
61
C
323 341Right-handed alpha
Helix 62
62
C
374 385Right-handed alpha
Helix 63
63
C
390 402Right-handed alpha
Helix 64
64
C
411 421Right-handed alpha
Helix 65
65
D
27 32Right-handed alpha
Helix 66
66
D
47 62Right-handed alpha
Helix 67
67
D
65 77Right-handed alpha
Helix 68
68
D
103 107Right-handed 310
Helix 69
69
D
129 145Right-handed alpha
Helix 70
70
D
149 168Right-handed alpha
Helix 71
71
D
183 187Right-handed 310
Helix 72
72
D
188 205Right-handed alpha
Helix 73
73
D
210 212Right-handed 310
Helix 74
74
D
213 218Right-handed alpha
Helix 75
75
D
219 221Right-handed 310
Helix 76
76
D
225 239Right-handed alpha
Helix 77
77
D
241 248Right-handed alpha
Helix 78
78
D
251 262Right-handed alpha
Helix 79
79
D
274 278Right-handed 310
Helix 80
80
D
294 308Right-handed alpha
Helix 81
81
D
312 316Right-handed 310
Helix 82
82
D
323 341Right-handed alpha
Helix 83
83
D
364 368Right-handed 310
Helix 84
84
D
374 385Right-handed alpha
Helix 85
85
D
390 402Right-handed alpha
Helix 86
86
D
411 421Right-handed alpha
Helix 87
87
E
27 35Right-handed alpha
Helix 88
88
E
47 62Right-handed alpha
Helix 89
89
E
65 77Right-handed alpha
Helix 90
90
E
133 147Right-handed alpha
Helix 91
91
E
149 166Right-handed alpha
Helix 92
92
E
179 184Right-handed alpha
Helix 93
93
E
185 188Right-handed 310
Helix 94
94
E
190 205Right-handed alpha
Helix 95
95
E
210 216Right-handed 310
Helix 96
96
E
217 221Right-handed 310
Helix 97
97
E
225 239Right-handed alpha
Helix 98
98
E
241 248Right-handed alpha
Helix 99
99
E
251 262Right-handed alpha
Helix 100
100
E
274 278Right-handed 310
Helix 101
101
E
294 308Right-handed alpha
Helix 102
102
E
312 316Right-handed 310
Helix 103
103
E
323 341Right-handed alpha
Helix 104
104
E
374 385Right-handed alpha
Helix 105
105
E
390 402Right-handed alpha
Helix 106
106
E
411 421Right-handed alpha
Helix 107
107
N
16 31Right-handed alpha
Helix 108
108
O
16 29Right-handed alpha
Helix 109
109
O
30 32Right-handed 310
Helix 110
110
P
16 32Right-handed alpha
Helix 111
111
Q
16 29Right-handed alpha
Helix 112
112
R
16 32Right-handed alpha
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There are 8 sheets in PDB entry 3PMK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 90first strand
Strand 2
A
93 96anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 40first strand
Strand 2
B
109 110parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 90first strand
Strand 2
B
93 94anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
88 90first strand
Strand 2
C
93 96anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
348 349first strand
Strand 2
P
7 8parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
88 90first strand
Strand 2
D
93 96anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
348 349first strand
Strand 2
N
7 8parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
88 90first strand
Strand 2
E
93 96anti-parallel
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