Analysis of interatomic Contacts of Structural Units in PDB entry:
3PMM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PMM entry

There is 1 chain in PDB entry 3PMM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -1PHE 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 3PMM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 38Right-handed alpha
Helix 2
2
A
64 82Right-handed alpha
Helix 3
3
A
83 101Right-handed alpha
Helix 4
4
A
112 124Right-handed alpha
Helix 5
5
A
125 127Right-handed 310
Helix 6
6
A
128 142Right-handed alpha
Helix 7
7
A
146 150Right-handed 310
Helix 8
8
A
167 172Right-handed alpha
Helix 9
9
A
172 183Right-handed alpha
Helix 10
10
A
185 204Right-handed alpha
Helix 11
11
A
228 247Right-handed alpha
Helix 12
12
A
252 273Right-handed alpha
Helix 13
13
A
292 308Right-handed alpha
Helix 14
14
A
312 314Right-handed 310
Helix 15
15
A
315 329Right-handed alpha
Helix 16
16
A
348 354Right-handed alpha
Helix 17
17
A
360 376Right-handed alpha
Helix 18
18
A
377 379Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 3PMM. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
54 55anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 165first strand
Strand 2
A
214 216anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 280first strand
Strand 2
A
290 291anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il