Analysis of interatomic Contacts of Structural Units in PDB entry:
3PNM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3PNM entry

There are 4 chains in PDB entry 3PNM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 10	LYS 356
B	ASP 10	LYS 356
C	ASP 10	LYS 356
D	GLN 9	LYS 356

There are 36 helices in PDB entry 3PNM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	10	23	Right-handed alpha
Helix 2	2	A	60	64	Right-handed 310
Helix 3	3	A	82	94	Right-handed alpha
Helix 4	4	A	106	123	Right-handed alpha
Helix 5	5	A	151	167	Right-handed alpha
Helix 6	6	A	169	182	Right-handed alpha
Helix 7	7	A	230	245	Right-handed alpha
Helix 8	8	A	289	307	Right-handed alpha
Helix 9	9	A	336	345	Right-handed alpha
Helix 10	10	B	10	23	Right-handed alpha
Helix 11	11	B	60	64	Right-handed 310
Helix 12	12	B	82	94	Right-handed alpha
Helix 13	13	B	106	123	Right-handed alpha
Helix 14	14	B	151	167	Right-handed alpha
Helix 15	15	B	169	182	Right-handed alpha
Helix 16	16	B	230	245	Right-handed alpha
Helix 17	17	B	289	307	Right-handed alpha
Helix 18	18	B	336	345	Right-handed alpha
Helix 19	19	C	10	23	Right-handed alpha
Helix 20	20	C	60	64	Right-handed 310
Helix 21	21	C	82	94	Right-handed alpha
Helix 22	22	C	106	123	Right-handed alpha
Helix 23	23	C	151	167	Right-handed alpha
Helix 24	24	C	169	182	Right-handed alpha
Helix 25	25	C	230	245	Right-handed alpha
Helix 26	26	C	289	307	Right-handed alpha
Helix 27	27	C	336	345	Right-handed alpha
Helix 28	28	D	9	23	Right-handed alpha
Helix 29	29	D	60	64	Right-handed 310
Helix 30	30	D	82	94	Right-handed alpha
Helix 31	31	D	106	123	Right-handed alpha
Helix 32	32	D	151	167	Right-handed alpha
Helix 33	33	D	169	182	Right-handed alpha
Helix 34	34	D	230	245	Right-handed alpha
Helix 35	35	D	289	308	Right-handed alpha
Helix 36	36	D	336	345	Right-handed alpha

There are 16 sheets in PDB entry 3PNM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	29	first strand
Strand 2	A	34	37	anti-parallel
Strand 3	A	71	77	anti-parallel
Strand 4	A	47	54	parallel
Strand 5	A	99	104	parallel
Strand 6	A	127	132	parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	227	first strand
Strand 2	A	210	213	anti-parallel
Strand 3	A	184	192	anti-parallel
Strand 4	A	326	335	anti-parallel
Strand 5	A	277	284	anti-parallel
Strand 6	A	310	317	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	256	first strand
Strand 2	A	261	269	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	348	first strand
Strand 2	A	353	354	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	29	first strand
Strand 2	B	34	37	anti-parallel
Strand 3	B	71	77	anti-parallel
Strand 4	B	47	54	parallel
Strand 5	B	99	104	parallel
Strand 6	B	127	132	parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	227	first strand
Strand 2	B	210	213	anti-parallel
Strand 3	B	184	192	anti-parallel
Strand 4	B	326	335	anti-parallel
Strand 5	B	277	284	anti-parallel
Strand 6	B	310	317	parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	256	first strand
Strand 2	B	261	269	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	348	first strand
Strand 2	B	353	354	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	29	first strand
Strand 2	C	34	37	anti-parallel
Strand 3	C	71	77	anti-parallel
Strand 4	C	47	54	parallel
Strand 5	C	99	104	parallel
Strand 6	C	127	132	parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	227	first strand
Strand 2	C	210	213	anti-parallel
Strand 3	C	184	192	anti-parallel
Strand 4	C	326	335	anti-parallel
Strand 5	C	277	284	anti-parallel
Strand 6	C	310	317	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	256	first strand
Strand 2	C	261	269	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	348	first strand
Strand 2	C	353	354	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	29	first strand
Strand 2	D	34	37	anti-parallel
Strand 3	D	71	77	anti-parallel
Strand 4	D	47	54	parallel
Strand 5	D	99	104	parallel
Strand 6	D	127	132	parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	227	first strand
Strand 2	D	210	213	anti-parallel
Strand 3	D	184	192	anti-parallel
Strand 4	D	326	335	anti-parallel
Strand 5	D	277	284	anti-parallel
Strand 6	D	310	317	parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	256	first strand
Strand 2	D	261	269	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	348	first strand
Strand 2	D	353	354	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3PNM

Analysis of interatomic Contacts of Structural Units in PDB entry:
3PNM