Analysis of interatomic Contacts of Structural Units in PDB entry:
3PNY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PNY entry

There are 2 chains in PDB entry 3PNY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5GLN 485
B
 MET 1GLN 485
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 3PNY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 38Right-handed alpha
Helix 2
2
A
53 69Right-handed alpha
Helix 3
3
A
86 89Right-handed 310
Helix 4
4
A
90 104Right-handed alpha
Helix 5
5
A
113 124Right-handed alpha
Helix 6
6
A
134 139Right-handed 310
Helix 7
7
A
140 151Right-handed alpha
Helix 8
8
A
195 207Right-handed alpha
Helix 9
9
A
217 220Right-handed 310
Helix 10
10
A
221 235Right-handed alpha
Helix 11
11
A
262 265Right-handed 310
Helix 12
12
A
266 274Right-handed alpha
Helix 13
13
A
276 286Right-handed alpha
Helix 14
14
A
299 307Right-handed alpha
Helix 15
15
A
308 312Right-handed 310
Helix 16
16
A
320 335Right-handed alpha
Helix 17
17
A
336 351Right-handed alpha
Helix 18
18
A
358 370Right-handed alpha
Helix 19
19
A
375 377Right-handed 310
Helix 20
20
A
378 384Right-handed alpha
Helix 21
21
A
385 391Right-handed 310
Helix 22
22
A
396 401Right-handed alpha
Helix 23
23
A
403 419Right-handed alpha
Helix 24
24
A
424 437Right-handed alpha
Helix 25
25
A
443 448Right-handed alpha
Helix 26
26
A
448 457Right-handed alpha
Helix 27
27
A
463 472Right-handed alpha
Helix 28
28
A
472 484Right-handed alpha
Helix 29
29
B
20 37Right-handed alpha
Helix 30
30
B
54 68Right-handed alpha
Helix 31
31
B
86 89Right-handed 310
Helix 32
32
B
90 104Right-handed alpha
Helix 33
33
B
134 139Right-handed 310
Helix 34
34
B
140 150Right-handed alpha
Helix 35
35
B
195 207Right-handed alpha
Helix 36
36
B
217 220Right-handed 310
Helix 37
37
B
221 235Right-handed alpha
Helix 38
38
B
262 265Right-handed 310
Helix 39
39
B
266 274Right-handed alpha
Helix 40
40
B
276 285Right-handed alpha
Helix 41
41
B
299 307Right-handed alpha
Helix 42
42
B
308 312Right-handed 310
Helix 43
43
B
320 335Right-handed alpha
Helix 44
44
B
336 351Right-handed alpha
Helix 45
45
B
358 370Right-handed alpha
Helix 46
46
B
375 377Right-handed 310
Helix 47
47
B
378 384Right-handed alpha
Helix 48
48
B
385 391Right-handed 310
Helix 49
49
B
394 402Right-handed alpha
Helix 50
50
B
405 420Right-handed alpha
Helix 51
51
B
424 437Right-handed alpha
Helix 52
52
B
443 457Right-handed alpha
Helix 53
53
B
463 472Right-handed alpha
Helix 54
54
B
472 485Right-handed alpha
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There are 11 sheets in PDB entry 3PNY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 11first strand
Strand 2
A
40 43parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 110first strand
Strand 2
A
155 158anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 169first strand
Strand 2
A
173 177anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 215first strand
Strand 2
A
243 247parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 251first strand
Strand 2
A
317 318parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 11first strand
Strand 2
B
40 43parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 110first strand
Strand 2
B
155 158anti-parallel
Strand 3
B
185 186anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 123first strand
Strand 2
B
129 131anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 169first strand
Strand 2
B
173 177anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 215first strand
Strand 2
B
243 247parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
250 251first strand
Strand 2
B
317 318parallel
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