Analysis of interatomic Contacts of Structural Units in PDB entry:
3PNZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PNZ entry

There are 12 chains in PDB entry 3PNZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2VAL 153
A
 PHE 155LYS 330
B
 SER 2VAL 153
B
 PHE 155LYS 330
C
 SER 2VAL 153
C
 PHE 155LYS 329
D
 SER 2VAL 153
D
 PHE 155LYS 329
E
 SER 2VAL 153
E
 PHE 155LYS 329
F
 SER 2VAL 153
F
 PHE 155LYS 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are157 helices in PDB entry 3PNZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 16Right-handed 310
Helix 2
2
A
29 34Right-handed alpha
Helix 3
3
A
35 36Right-handed 310
Helix 4
4
A
37 41Right-handed 310
Helix 5
5
A
44 58Right-handed alpha
Helix 6
6
A
68 72Right-handed 310
Helix 7
7
A
74 86Right-handed alpha
Helix 8
8
A
97 103Right-handed 310
Helix 9
9
A
106 108Right-handed 310
Helix 10
10
A
109 114Right-handed alpha
Helix 11
11
A
118 125Right-handed alpha
Helix 12
12
A
127 141Right-handed alpha
Helix 13
13
A
163 181Right-handed alpha
Helix 14
14
A
188 192Right-handed 310
Helix 15
15
A
193 204Right-handed alpha
Helix 16
16
A
207 209Right-handed 310
Helix 17
17
A
215 219Right-handed 310
Helix 18
18
A
221 230Right-handed alpha
Helix 19
19
A
247 261Right-handed alpha
Helix 20
20
A
263 265Right-handed 310
Helix 21
21
A
275 278Right-handed 310
Helix 22
22
A
279 284Right-handed alpha
Helix 23
23
A
288 294Right-handed alpha
Helix 24
24
A
294 306Right-handed alpha
Helix 25
25
A
309 319Right-handed alpha
Helix 26
26
A
319 326Right-handed alpha
Helix 27
27
B
12 16Right-handed 310
Helix 28
28
B
29 34Right-handed alpha
Helix 29
29
B
35 36Right-handed 310
Helix 30
30
B
37 41Right-handed 310
Helix 31
31
B
44 58Right-handed alpha
Helix 32
32
B
68 72Right-handed 310
Helix 33
33
B
74 86Right-handed alpha
Helix 34
34
B
97 103Right-handed 310
Helix 35
35
B
106 108Right-handed 310
Helix 36
36
B
109 114Right-handed alpha
Helix 37
37
B
118 126Right-handed alpha
Helix 38
38
B
127 141Right-handed alpha
Helix 39
39
B
163 181Right-handed alpha
Helix 40
40
B
188 192Right-handed 310
Helix 41
41
B
193 204Right-handed alpha
Helix 42
42
B
207 209Right-handed 310
Helix 43
43
B
215 219Right-handed 310
Helix 44
44
B
221 230Right-handed alpha
Helix 45
45
B
247 261Right-handed alpha
Helix 46
46
B
263 265Right-handed 310
Helix 47
47
B
275 278Right-handed 310
Helix 48
48
B
279 284Right-handed alpha
Helix 49
49
B
289 294Right-handed alpha
Helix 50
50
B
294 306Right-handed alpha
Helix 51
51
B
309 319Right-handed alpha
Helix 52
52
B
319 326Right-handed alpha
Helix 53
53
C
12 16Right-handed 310
Helix 54
54
C
29 34Right-handed alpha
Helix 55
55
C
35 36Right-handed 310
Helix 56
56
C
37 41Right-handed 310
Helix 57
57
C
44 58Right-handed alpha
Helix 58
58
C
68 72Right-handed 310
Helix 59
59
C
74 86Right-handed alpha
Helix 60
60
C
97 103Right-handed 310
Helix 61
61
C
106 108Right-handed 310
Helix 62
62
C
109 114Right-handed alpha
Helix 63
63
C
118 125Right-handed alpha
Helix 64
64
C
127 141Right-handed alpha
Helix 65
65
C
142 146Right-handed 310
Helix 66
66
C
163 181Right-handed alpha
Helix 67
67
C
188 192Right-handed 310
Helix 68
68
C
193 204Right-handed alpha
Helix 69
69
C
207 209Right-handed 310
Helix 70
70
C
215 219Right-handed 310
Helix 71
71
C
221 230Right-handed alpha
Helix 72
72
C
247 261Right-handed alpha
Helix 73
73
C
263 265Right-handed 310
Helix 74
74
C
275 278Right-handed 310
Helix 75
75
C
279 284Right-handed alpha
Helix 76
76
C
289 294Right-handed alpha
Helix 77
77
C
294 306Right-handed alpha
Helix 78
78
C
309 319Right-handed alpha
Helix 79
79
C
319 326Right-handed alpha
Helix 80
80
D
12 16Right-handed 310
Helix 81
81
D
29 35Right-handed alpha
Helix 82
82
D
36 41Right-handed 310
Helix 83
83
D
44 58Right-handed alpha
Helix 84
84
D
68 72Right-handed 310
Helix 85
85
D
74 86Right-handed alpha
Helix 86
86
D
97 103Right-handed 310
Helix 87
87
D
106 108Right-handed 310
Helix 88
88
D
109 114Right-handed alpha
Helix 89
89
D
118 125Right-handed alpha
Helix 90
90
D
127 141Right-handed alpha
Helix 91
91
D
142 146Right-handed 310
Helix 92
92
D
163 181Right-handed alpha
Helix 93
93
D
188 192Right-handed 310
Helix 94
94
D
193 204Right-handed alpha
Helix 95
95
D
207 209Right-handed 310
Helix 96
96
D
215 219Right-handed 310
Helix 97
97
D
221 230Right-handed alpha
Helix 98
98
D
247 261Right-handed alpha
Helix 99
99
D
263 265Right-handed 310
Helix 100
100
D
275 278Right-handed 310
Helix 101
101
D
279 284Right-handed alpha
Helix 102
102
D
288 294Right-handed alpha
Helix 103
103
D
294 306Right-handed alpha
Helix 104
104
D
309 319Right-handed alpha
Helix 105
105
D
319 327Right-handed alpha
Helix 106
106
E
12 16Right-handed 310
Helix 107
107
E
29 34Right-handed alpha
Helix 108
108
E
35 36Right-handed 310
Helix 109
109
E
37 41Right-handed 310
Helix 110
110
E
44 58Right-handed alpha
Helix 111
111
E
68 72Right-handed 310
Helix 112
112
E
74 86Right-handed alpha
Helix 113
113
E
97 103Right-handed 310
Helix 114
114
E
106 108Right-handed 310
Helix 115
115
E
109 114Right-handed alpha
Helix 116
116
E
118 125Right-handed alpha
Helix 117
117
E
127 141Right-handed alpha
Helix 118
118
E
142 146Right-handed 310
Helix 119
119
E
163 181Right-handed alpha
Helix 120
120
E
188 192Right-handed 310
Helix 121
121
E
193 204Right-handed alpha
Helix 122
122
E
207 209Right-handed 310
Helix 123
123
E
215 219Right-handed 310
Helix 124
124
E
221 230Right-handed alpha
Helix 125
125
E
247 261Right-handed alpha
Helix 126
126
E
263 265Right-handed 310
Helix 127
127
E
275 278Right-handed 310
Helix 128
128
E
279 284Right-handed alpha
Helix 129
129
E
288 294Right-handed alpha
Helix 130
130
E
294 306Right-handed alpha
Helix 131
131
E
309 319Right-handed alpha
Helix 132
132
E
319 326Right-handed alpha
Helix 133
133
F
12 16Right-handed 310
Helix 134
134
F
29 35Right-handed alpha
Helix 135
135
F
36 41Right-handed 310
Helix 136
136
F
44 58Right-handed alpha
Helix 137
137
F
68 72Right-handed 310
Helix 138
138
F
74 86Right-handed alpha
Helix 139
139
F
97 103Right-handed 310
Helix 140
140
F
106 108Right-handed 310
Helix 141
141
F
109 114Right-handed alpha
Helix 142
142
F
118 125Right-handed alpha
Helix 143
143
F
127 141Right-handed alpha
Helix 144
144
F
142 146Right-handed 310
Helix 145
145
F
163 181Right-handed alpha
Helix 146
146
F
188 192Right-handed 310
Helix 147
147
F
193 204Right-handed alpha
Helix 148
148
F
207 209Right-handed 310
Helix 149
149
F
215 219Right-handed 310
Helix 150
150
F
221 230Right-handed alpha
Helix 151
151
F
247 261Right-handed alpha
Helix 152
152
F
263 265Right-handed 310
Helix 153
153
F
275 279Right-handed 310
Helix 154
154
F
289 294Right-handed alpha
Helix 155
155
F
294 306Right-handed alpha
Helix 156
156
F
309 319Right-handed alpha
Helix 157
157
F
319 327Right-handed alpha
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There are 12 sheets in PDB entry 3PNZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
9 11anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 23first strand
Strand 2
A
62 65parallel
Strand 3
A
88 94parallel
Strand 4
A
150 156parallel
Strand 5
A
184 187parallel
Strand 6
A
211 213parallel
Strand 7
A
234 237parallel
Strand 8
A
267 269parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
9 11anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 23first strand
Strand 2
B
62 65parallel
Strand 3
B
88 94parallel
Strand 4
B
150 156parallel
Strand 5
B
184 187parallel
Strand 6
B
211 213parallel
Strand 7
B
234 237parallel
Strand 8
B
267 269parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 6first strand
Strand 2
C
9 11anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 23first strand
Strand 2
C
62 65parallel
Strand 3
C
88 94parallel
Strand 4
C
150 156parallel
Strand 5
C
184 187parallel
Strand 6
C
211 213parallel
Strand 7
C
234 237parallel
Strand 8
C
267 269parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 6first strand
Strand 2
D
9 11anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 23first strand
Strand 2
D
62 65parallel
Strand 3
D
88 94parallel
Strand 4
D
150 156parallel
Strand 5
D
184 187parallel
Strand 6
D
211 213parallel
Strand 7
D
234 237parallel
Strand 8
D
267 269parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 6first strand
Strand 2
E
9 11anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
19 23first strand
Strand 2
E
62 65parallel
Strand 3
E
88 94parallel
Strand 4
E
150 156parallel
Strand 5
E
184 187parallel
Strand 6
E
211 213parallel
Strand 7
E
234 237parallel
Strand 8
E
267 269parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
4 6first strand
Strand 2
F
9 11anti-parallel
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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
19 23first strand
Strand 2
F
62 65parallel
Strand 3
F
88 94parallel
Strand 4
F
150 156parallel
Strand 5
F
184 187parallel
Strand 6
F
211 213parallel
Strand 7
F
234 237parallel
Strand 8
F
267 269parallel
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