Analysis of interatomic Contacts of Structural Units in PDB entry:
3POM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3POM entry

There are 2 chains in PDB entry 3POM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 383PRO 786
B
 ILE 382ILE 785
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 3POM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
383 392Right-handed alpha
Helix 2
2
A
397 406Right-handed alpha
Helix 3
3
A
411 435Right-handed alpha
Helix 4
4
A
439 469Right-handed alpha
Helix 5
5
A
473 479Right-handed alpha
Helix 6
6
A
479 499Right-handed alpha
Helix 7
7
A
515 521Right-handed alpha
Helix 8
8
A
524 530Right-handed alpha
Helix 9
9
A
531 539Right-handed alpha
Helix 10
10
A
543 560Right-handed alpha
Helix 11
11
A
561 564Right-handed 310
Helix 12
12
A
567 579Right-handed alpha
Helix 13
13
A
644 670Right-handed alpha
Helix 14
14
A
675 691Right-handed alpha
Helix 15
15
A
692 696Right-handed 310
Helix 16
16
A
699 715Right-handed alpha
Helix 17
17
A
720 729Right-handed alpha
Helix 18
18
A
736 741Right-handed alpha
Helix 19
19
A
751 759Right-handed alpha
Helix 20
20
A
759 770Right-handed alpha
Helix 21
21
A
771 773Right-handed 310
Helix 22
22
B
382 391Right-handed alpha
Helix 23
23
B
397 406Right-handed alpha
Helix 24
24
B
411 435Right-handed alpha
Helix 25
25
B
438 469Right-handed alpha
Helix 26
26
B
473 478Right-handed alpha
Helix 27
27
B
479 500Right-handed alpha
Helix 28
28
B
515 521Right-handed alpha
Helix 29
29
B
524 530Right-handed alpha
Helix 30
30
B
531 539Right-handed alpha
Helix 31
31
B
543 560Right-handed alpha
Helix 32
32
B
561 564Right-handed 310
Helix 33
33
B
568 577Right-handed alpha
Helix 34
34
B
644 669Right-handed alpha
Helix 35
35
B
675 691Right-handed alpha
Helix 36
36
B
692 696Right-handed 310
Helix 37
37
B
699 715Right-handed alpha
Helix 38
38
B
720 729Right-handed alpha
Helix 39
39
B
736 741Right-handed alpha
Helix 40
40
B
751 759Right-handed alpha
Helix 41
41
B
759 769Right-handed alpha
Helix 42
42
B
770 772Right-handed 310
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There are 2 sheets in PDB entry 3POM. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
742 743first strand
Strand 2
A
749 750anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
742 743first strand
Strand 2
B
749 750anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il