Analysis of interatomic Contacts of Structural Units in PDB entry:
3POY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3POY entry

There is 1 chain in PDB entry 3POY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 294VAL 1352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3POY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
474 482Right-handed alpha
Helix 2
2
A
654 659Right-handed alpha
Helix 3
3
A
678 686Right-handed alpha
Helix 4
4
A
701 706Right-handed 310
Helix 5
5
A
901 908Right-handed alpha
Helix 6
6
A
1056 1062Right-handed 310
Helix 7
7
A
1163 1167Right-handed 310
Helix 8
8
A
1309 1313Right-handed 310
Helix 9
9
A
1329 1336Right-handed alpha
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There are 16 sheets in PDB entry 3POY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 303first strand
Strand 2
A
458 468anti-parallel
Strand 3
A
321 330anti-parallel
Strand 4
A
384 391anti-parallel
Strand 5
A
394 414anti-parallel
Strand 6
A
418 423anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 303first strand
Strand 2
A
458 468anti-parallel
Strand 3
A
472 473anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 371first strand
Strand 2
A
355 361anti-parallel
Strand 3
A
346 352anti-parallel
Strand 4
A
334 340anti-parallel
Strand 5
A
436 439anti-parallel
Strand 6
A
307 311anti-parallel
Strand 7
A
486 489anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 319first strand
Strand 2
A
431 433anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
618 622first strand
Strand 2
A
609 614anti-parallel
Strand 3
A
599 606anti-parallel
Strand 4
A
524 532anti-parallel
Strand 5
A
665 672anti-parallel
Strand 6
A
675 677anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
618 622first strand
Strand 2
A
609 614anti-parallel
Strand 3
A
599 606anti-parallel
Strand 4
A
524 532anti-parallel
Strand 5
A
665 672anti-parallel
Strand 6
A
505 507anti-parallel
Strand 7
A
691 692anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
514 516first strand
Strand 2
A
636 638anti-parallel
Strand 3
A
538 544anti-parallel
Strand 4
A
563 569anti-parallel
Strand 5
A
572 578anti-parallel
Strand 6
A
583 587anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
713 716first strand
Strand 2
A
721 724anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
730 731first strand
Strand 2
A
737 738anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 857first strand
Strand 2
A
843 848anti-parallel
Strand 3
A
833 840anti-parallel
Strand 4
A
762 769anti-parallel
Strand 5
A
889 897anti-parallel
Strand 6
A
741 745anti-parallel
Strand 7
A
919 920anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
819 823first strand
Strand 2
A
798 804anti-parallel
Strand 3
A
789 795anti-parallel
Strand 4
A
775 782anti-parallel
Strand 5
A
865 872anti-parallel
Strand 6
A
750 760anti-parallel
Strand 7
A
914 916anti-parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1031 1036first strand
Strand 2
A
1023 1028anti-parallel
Strand 3
A
1012 1018anti-parallel
Strand 4
A
950 957anti-parallel
Strand 5
A
1074 1081anti-parallel
Strand 6
A
930 932anti-parallel
Strand 7
A
1099 1101anti-parallel
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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
995 999first strand
Strand 2
A
984 990anti-parallel
Strand 3
A
975 981anti-parallel
Strand 4
A
963 969anti-parallel
Strand 5
A
1049 1051anti-parallel
Strand 6
A
938 941anti-parallel
Strand 7
A
1094 1096anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1120 1124first strand
Strand 2
A
1127 1131anti-parallel
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There are 11 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1221 1224first strand
Strand 2
A
1209 1215anti-parallel
Strand 3
A
1200 1206anti-parallel
Strand 4
A
1185 1193anti-parallel
Strand 5
A
1302 1307anti-parallel
Strand 6
A
1148 1161anti-parallel
Strand 7
A
1318 1325anti-parallel
Strand 8
A
1172 1180anti-parallel
Strand 9
A
1236 1243anti-parallel
Strand 10
A
1246 1251anti-parallel
Strand 11
A
1257 1259anti-parallel
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There are 7 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1221 1224first strand
Strand 2
A
1209 1215anti-parallel
Strand 3
A
1200 1206anti-parallel
Strand 4
A
1185 1193anti-parallel
Strand 5
A
1302 1307anti-parallel
Strand 6
A
1148 1161anti-parallel
Strand 7
A
1341 1349anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il