Analysis of interatomic Contacts of Structural Units in PDB entry:
3PP2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PP2 entry

There are 2 chains in PDB entry 3PP2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 498GLN 612
B
 LEU 497GLN 612
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 3PP2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
548 553Right-handed 310
Helix 2
2
A
570 574Right-handed 310
Helix 3
3
A
596 612Right-handed alpha
Helix 4
4
B
548 552Right-handed 310
Helix 5
5
B
596 612Right-handed alpha
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There are 4 sheets in PDB entry 3PP2. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
513 514first strand
Strand 2
A
499 510anti-parallel
Strand 3
A
521 528anti-parallel
Strand 4
A
531 535anti-parallel
Strand 5
A
555 560anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
513 514first strand
Strand 2
A
499 510anti-parallel
Strand 3
A
589 593anti-parallel
Strand 4
A
579 583anti-parallel
Strand 5
A
565 568anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
513 514first strand
Strand 2
B
498 510anti-parallel
Strand 3
B
521 528anti-parallel
Strand 4
B
531 535anti-parallel
Strand 5
B
555 560anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
513 514first strand
Strand 2
B
498 510anti-parallel
Strand 3
B
589 593anti-parallel
Strand 4
B
580 583anti-parallel
Strand 5
B
565 568anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il