Analysis of interatomic Contacts of Structural Units in PDB entry:
3PP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PP8 entry

There is 1 chain in PDB entry 3PP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2ALA 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3PP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 23Right-handed alpha
Helix 2
2
A
48 53Right-handed alpha
Helix 3
3
A
67 77Right-handed alpha
Helix 4
4
A
95 112Right-handed alpha
Helix 5
5
A
113 123Right-handed alpha
Helix 6
6
A
145 157Right-handed alpha
Helix 7
7
A
180 190Right-handed alpha
Helix 8
8
A
201 205Right-handed 310
Helix 9
9
A
209 214Right-handed alpha
Helix 10
10
A
227 231Right-handed 310
Helix 11
11
A
232 242Right-handed alpha
Helix 12
12
A
262 267Right-handed 310
Helix 13
13
A
281 299Right-handed alpha
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There are 2 sheets in PDB entry 3PP8. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 30first strand
Strand 2
A
1 6parallel
Strand 3
A
41 44parallel
Strand 4
A
59 62parallel
Strand 5
A
87 89parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 179first strand
Strand 2
A
162 166parallel
Strand 3
A
139 142parallel
Strand 4
A
193 196parallel
Strand 5
A
220 224parallel
Strand 6
A
245 250parallel
Strand 7
A
270 272parallel
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