Analysis of interatomic Contacts of Structural Units in PDB entry:
3PPB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PPB entry

There are 2 chains in PDB entry 3PPB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 7ARG 194
B
 ARG 7ARG 194
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3PPB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 24Right-handed alpha
Helix 2
2
A
30 39Right-handed alpha
Helix 3
3
A
41 49Right-handed alpha
Helix 4
4
A
51 74Right-handed alpha
Helix 5
5
A
80 99Right-handed alpha
Helix 6
6
A
99 110Right-handed alpha
Helix 7
7
A
116 126Right-handed alpha
Helix 8
8
A
128 141Right-handed alpha
Helix 9
9
A
148 170Right-handed alpha
Helix 10
10
A
171 175Right-handed 310
Helix 11
11
A
176 192Right-handed alpha
Helix 12
12
B
8 24Right-handed alpha
Helix 13
13
B
30 39Right-handed alpha
Helix 14
14
B
41 49Right-handed alpha
Helix 15
15
B
51 74Right-handed alpha
Helix 16
16
B
80 99Right-handed alpha
Helix 17
17
B
99 110Right-handed alpha
Helix 18
18
B
116 126Right-handed alpha
Helix 19
19
B
128 141Right-handed alpha
Helix 20
20
B
148 170Right-handed alpha
Helix 21
21
B
171 175Right-handed 310
Helix 22
22
B
176 192Right-handed alpha
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There are no sheets in PDB entry 3PPB
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il