Analysis of interatomic Contacts of Structural Units in PDB entry:
3PPH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PPH entry

There are 2 chains in PDB entry 3PPH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 766
B
 MET 1GLU 615
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 3PPH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 27Right-handed alpha
Helix 2
2
A
31 54Right-handed alpha
Helix 3
3
A
67 76Right-handed alpha
Helix 4
4
A
80 85Right-handed 310
Helix 5
5
A
89 100Right-handed alpha
Helix 6
6
A
148 160Right-handed alpha
Helix 7
7
A
170 177Right-handed alpha
Helix 8
8
A
182 185Right-handed 310
Helix 9
9
A
188 191Right-handed 310
Helix 10
10
A
192 209Right-handed alpha
Helix 11
11
A
220 224Right-handed 310
Helix 12
12
A
227 232Right-handed alpha
Helix 13
13
A
232 242Right-handed alpha
Helix 14
14
A
258 265Right-handed 310
Helix 15
15
A
280 282Right-handed 310
Helix 16
16
A
283 290Right-handed alpha
Helix 17
17
A
311 327Right-handed alpha
Helix 18
18
A
338 342Right-handed 310
Helix 19
19
A
345 349Right-handed 310
Helix 20
20
A
353 358Right-handed alpha
Helix 21
21
A
362 379Right-handed alpha
Helix 22
22
A
382 398Right-handed alpha
Helix 23
23
A
404 412Right-handed alpha
Helix 24
24
A
416 420Right-handed 310
Helix 25
25
A
424 437Right-handed alpha
Helix 26
26
A
452 464Right-handed alpha
Helix 27
27
A
468 491Right-handed alpha
Helix 28
28
A
506 511Right-handed alpha
Helix 29
29
A
548 557Right-handed alpha
Helix 30
30
A
569 576Right-handed alpha
Helix 31
31
A
584 605Right-handed alpha
Helix 32
32
A
627 646Right-handed alpha
Helix 33
33
A
664 672Right-handed alpha
Helix 34
34
A
684 689Right-handed alpha
Helix 35
35
A
690 693Right-handed 310
Helix 36
36
A
713 725Right-handed alpha
Helix 37
37
A
729 731Right-handed 310
Helix 38
38
A
745 766Right-handed alpha
Helix 39
39
B
16 27Right-handed alpha
Helix 40
40
B
31 54Right-handed alpha
Helix 41
41
B
67 76Right-handed alpha
Helix 42
42
B
80 85Right-handed 310
Helix 43
43
B
89 100Right-handed alpha
Helix 44
44
B
148 160Right-handed alpha
Helix 45
45
B
170 177Right-handed alpha
Helix 46
46
B
182 185Right-handed 310
Helix 47
47
B
188 191Right-handed 310
Helix 48
48
B
192 209Right-handed alpha
Helix 49
49
B
220 224Right-handed 310
Helix 50
50
B
227 232Right-handed alpha
Helix 51
51
B
232 242Right-handed alpha
Helix 52
52
B
258 265Right-handed 310
Helix 53
53
B
280 282Right-handed 310
Helix 54
54
B
283 290Right-handed alpha
Helix 55
55
B
311 327Right-handed alpha
Helix 56
56
B
338 342Right-handed 310
Helix 57
57
B
345 349Right-handed 310
Helix 58
58
B
353 358Right-handed alpha
Helix 59
59
B
362 379Right-handed alpha
Helix 60
60
B
382 398Right-handed alpha
Helix 61
61
B
404 412Right-handed alpha
Helix 62
62
B
416 420Right-handed 310
Helix 63
63
B
424 437Right-handed alpha
Helix 64
64
B
452 464Right-handed alpha
Helix 65
65
B
468 491Right-handed alpha
Helix 66
66
B
506 511Right-handed alpha
Helix 67
67
B
548 557Right-handed alpha
Helix 68
68
B
569 576Right-handed alpha
Helix 69
69
B
584 606Right-handed alpha
Helix 70
70
B
627 646Right-handed alpha
Helix 71
71
B
664 672Right-handed alpha
Helix 72
72
B
689 694Right-handed 310
Helix 73
73
B
713 725Right-handed alpha
Helix 74
74
B
729 731Right-handed 310
Helix 75
75
B
745 767Right-handed alpha
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There are 13 sheets in PDB entry 3PPH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
331 335parallel
Strand 3
A
296 302parallel
Strand 4
A
272 276parallel
Strand 5
A
248 252parallel
Strand 6
A
214 218parallel
Strand 7
A
164 169parallel
Strand 8
A
58 60parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
113 114anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 121first strand
Strand 2
A
128 130anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
179 180parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
514 517first strand
Strand 2
A
536 542anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
524 527first strand
Strand 2
A
530 532anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
564 568first strand
Strand 2
A
610 614parallel
Strand 3
A
653 657parallel
Strand 4
A
675 680parallel
Strand 5
A
698 703parallel
Strand 6
A
733 735parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
331 335parallel
Strand 3
B
296 302parallel
Strand 4
B
272 276parallel
Strand 5
B
248 252parallel
Strand 6
B
214 218parallel
Strand 7
B
164 169parallel
Strand 8
B
58 60parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 121first strand
Strand 2
B
128 130anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
179 180parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
514 517first strand
Strand 2
B
536 542anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
524 527first strand
Strand 2
B
530 532anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
564 568first strand
Strand 2
B
610 614parallel
Strand 3
B
653 658parallel
Strand 4
B
675 680parallel
Strand 5
B
698 703parallel
Strand 6
B
733 735parallel
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