Analysis of interatomic Contacts of Structural Units in PDB entry:
3PRY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PRY entry

There are 3 chains in PDB entry 3PRY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 284ASN 546
B
 LYS 284LEU 547
C
 THR 285GLU 545
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 3PRY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
287 291Right-handed 310
Helix 2
2
A
292 296Right-handed 310
Helix 3
3
A
297 310Right-handed alpha
Helix 4
4
A
366 370Right-handed 310
Helix 5
5
A
371 375Right-handed 310
Helix 6
6
A
394 421Right-handed alpha
Helix 7
7
A
422 444Right-handed alpha
Helix 8
8
A
447 454Right-handed alpha
Helix 9
9
A
469 475Right-handed alpha
Helix 10
10
A
490 496Right-handed alpha
Helix 11
11
A
497 505Right-handed alpha
Helix 12
12
A
517 526Right-handed alpha
Helix 13
13
B
287 291Right-handed 310
Helix 14
14
B
292 296Right-handed 310
Helix 15
15
B
297 310Right-handed alpha
Helix 16
16
B
366 370Right-handed 310
Helix 17
17
B
371 375Right-handed 310
Helix 18
18
B
398 420Right-handed alpha
Helix 19
19
B
422 444Right-handed alpha
Helix 20
20
B
447 453Right-handed alpha
Helix 21
21
B
468 475Right-handed alpha
Helix 22
22
B
490 496Right-handed alpha
Helix 23
23
B
497 506Right-handed alpha
Helix 24
24
B
517 526Right-handed alpha
Helix 25
25
C
287 291Right-handed 310
Helix 26
26
C
292 296Right-handed 310
Helix 27
27
C
297 310Right-handed alpha
Helix 28
28
C
366 370Right-handed 310
Helix 29
29
C
393 420Right-handed alpha
Helix 30
30
C
422 444Right-handed alpha
Helix 31
31
C
447 455Right-handed alpha
Helix 32
32
C
469 475Right-handed alpha
Helix 33
33
C
490 496Right-handed alpha
Helix 34
34
C
497 506Right-handed alpha
Helix 35
35
C
517 526Right-handed alpha
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There are 7 sheets in PDB entry 3PRY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 323first strand
Strand 2
A
329 335anti-parallel
Strand 3
A
378 383anti-parallel
Strand 4
A
353 357parallel
Strand 5
A
360 363anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
467 468first strand
Strand 2
A
456 459anti-parallel
Strand 3
A
510 512anti-parallel
Strand 4
A
482 486parallel
Strand 5
A
531 535parallel
Strand 6
A
527 528anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 323first strand
Strand 2
B
329 335anti-parallel
Strand 3
B
378 383anti-parallel
Strand 4
B
353 357parallel
Strand 5
B
360 363anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
458 459first strand
Strand 2
B
510 513anti-parallel
Strand 3
B
483 487parallel
Strand 4
B
531 535parallel
Strand 5
B
527 528anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
317 323first strand
Strand 2
C
329 335anti-parallel
Strand 3
C
378 383anti-parallel
Strand 4
C
353 357parallel
Strand 5
C
361 363anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
456 457first strand
Strand 2
C
467 468anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
510 513first strand
Strand 2
C
483 487parallel
Strand 3
C
531 535parallel
Strand 4
C
527 528anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il