Analysis of interatomic Contacts of Structural Units in PDB entry:
3PS9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PS9 entry

There is 1 chain in PDB entry 3PS9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -7LYS 663
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3PS9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-4 2Right-handed 310
Helix 2
2
A
33 42Right-handed alpha
Helix 3
3
A
43 46Right-handed 310
Helix 4
4
A
47 52Right-handed alpha
Helix 5
5
A
53 55Right-handed 310
Helix 6
6
A
70 87Right-handed alpha
Helix 7
7
A
106 115Right-handed alpha
Helix 8
8
A
116 119Right-handed 310
Helix 9
9
A
120 131Right-handed alpha
Helix 10
10
A
144 146Right-handed 310
Helix 11
11
A
156 161Right-handed alpha
Helix 12
12
A
162 164Right-handed 310
Helix 13
13
A
165 169Right-handed 310
Helix 14
14
A
181 189Right-handed 310
Helix 15
15
A
190 200Right-handed alpha
Helix 16
16
A
213 224Right-handed alpha
Helix 17
17
A
254 258Right-handed 310
Helix 18
18
A
273 285Right-handed alpha
Helix 19
19
A
319 340Right-handed alpha
Helix 20
20
A
357 369Right-handed alpha
Helix 21
21
A
381 390Right-handed alpha
Helix 22
22
A
407 422Right-handed alpha
Helix 23
23
A
461 467Right-handed 310
Helix 24
24
A
491 495Right-handed 310
Helix 25
25
A
531 546Right-handed alpha
Helix 26
26
A
549 554Right-handed alpha
Helix 27
27
A
582 590Right-handed alpha
Helix 28
28
A
618 635Right-handed alpha
Helix 29
29
A
642 648Right-handed alpha
Helix 30
30
A
652 661Right-handed alpha
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There are 7 sheets in PDB entry 3PS9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
20 21anti-parallel
Strand 3
A
26 27anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 143first strand
Strand 2
A
148 154anti-parallel
Strand 3
A
94 101parallel
Strand 4
A
59 65parallel
Strand 5
A
172 177parallel
Strand 6
A
201 209parallel
Strand 7
A
238 243anti-parallel
Strand 8
A
226 231anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 428first strand
Strand 2
A
289 294parallel
Strand 3
A
266 270parallel
Strand 4
A
456 459parallel
Strand 5
A
605 613parallel
Strand 6
A
576 581anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 311first strand
Strand 2
A
404 406anti-parallel
Strand 3
A
346 347anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 380first strand
Strand 2
A
397 400anti-parallel
Strand 3
A
351 354anti-parallel
Strand 4
A
498 500parallel
Strand 5
A
504 505anti-parallel
Strand 6
A
514 518anti-parallel
Strand 7
A
477 487anti-parallel
Strand 8
A
522 523anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 380first strand
Strand 2
A
397 400anti-parallel
Strand 3
A
351 354anti-parallel
Strand 4
A
498 500parallel
Strand 5
A
504 505anti-parallel
Strand 6
A
514 518anti-parallel
Strand 7
A
477 487anti-parallel
Strand 8
A
562 569anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 438first strand
Strand 2
A
441 446anti-parallel
Strand 3
A
451 454anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il