Analysis of interatomic Contacts of Structural Units in PDB entry:
3PTY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PTY entry

There is 1 chain in PDB entry 3PTY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 735TYR 1067
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 3PTY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
735 747Right-handed alpha
Helix 2
2
A
749 753Right-handed 310
Helix 3
3
A
760 765Right-handed 310
Helix 4
4
A
772 777Right-handed alpha
Helix 5
5
A
844 848Right-handed 310
Helix 6
6
A
892 894Right-handed 310
Helix 7
7
A
902 908Right-handed alpha
Helix 8
8
A
934 936Right-handed 310
Helix 9
9
A
971 976Right-handed alpha
Helix 10
10
A
984 989Right-handed alpha
Helix 11
11
A
999 1003Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 3PTY. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
969 970first strand
Strand 2
A
755 758anti-parallel
Strand 3
A
1040 1049anti-parallel
Strand 4
A
1059 1065anti-parallel
Strand 5
A
1009 1012anti-parallel
Strand 6
A
980 982parallel
Strand 7
A
995 996parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
781 783first strand
Strand 2
A
862 865anti-parallel
Strand 3
A
942 949anti-parallel
Strand 4
A
869 870anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
781 783first strand
Strand 2
A
862 865anti-parallel
Strand 3
A
942 949anti-parallel
Strand 4
A
896 901anti-parallel
Strand 5
A
913 916anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
851 852first strand
Strand 2
A
958 960anti-parallel
Strand 3
A
882 889anti-parallel
Strand 4
A
927 932anti-parallel
Strand 5
A
918 920anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il