Analysis of interatomic Contacts of Structural Units in PDB entry:
3PU0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PU0 entry

There are 6 chains in PDB entry 3PU0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LYS 422
B
 SER 2LYS 422
C
 SER 2LYS 422
D
 SER 2LYS 422
E
 SER 2LYS 422
R
 C 1 C 45
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 87 helices in PDB entry 3PU0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 60Right-handed alpha
Helix 2
2
A
65 77Right-handed alpha
Helix 3
3
A
133 147Right-handed alpha
Helix 4
4
A
151 159Right-handed alpha
Helix 5
5
A
184 187Right-handed 310
Helix 6
6
A
188 205Right-handed alpha
Helix 7
7
A
208 221Right-handed 310
Helix 8
8
A
226 239Right-handed alpha
Helix 9
9
A
241 248Right-handed alpha
Helix 10
10
A
251 263Right-handed alpha
Helix 11
11
A
274 278Right-handed 310
Helix 12
12
A
294 308Right-handed alpha
Helix 13
13
A
311 316Right-handed 310
Helix 14
14
A
323 341Right-handed alpha
Helix 15
15
A
374 385Right-handed alpha
Helix 16
16
A
390 402Right-handed alpha
Helix 17
17
A
411 421Right-handed alpha
Helix 18
18
B
47 60Right-handed alpha
Helix 19
19
B
65 77Right-handed alpha
Helix 20
20
B
133 147Right-handed alpha
Helix 21
21
B
151 159Right-handed alpha
Helix 22
22
B
184 187Right-handed 310
Helix 23
23
B
188 205Right-handed alpha
Helix 24
24
B
210 221Right-handed 310
Helix 25
25
B
226 239Right-handed alpha
Helix 26
26
B
241 248Right-handed alpha
Helix 27
27
B
251 263Right-handed alpha
Helix 28
28
B
274 278Right-handed 310
Helix 29
29
B
294 308Right-handed alpha
Helix 30
30
B
311 316Right-handed 310
Helix 31
31
B
323 341Right-handed alpha
Helix 32
32
B
374 385Right-handed alpha
Helix 33
33
B
390 402Right-handed alpha
Helix 34
34
B
411 421Right-handed alpha
Helix 35
35
C
47 60Right-handed alpha
Helix 36
36
C
65 77Right-handed alpha
Helix 37
37
C
133 147Right-handed alpha
Helix 38
38
C
151 159Right-handed alpha
Helix 39
39
C
163 168Right-handed alpha
Helix 40
40
C
184 187Right-handed 310
Helix 41
41
C
188 205Right-handed alpha
Helix 42
42
C
210 221Right-handed 310
Helix 43
43
C
226 239Right-handed alpha
Helix 44
44
C
241 248Right-handed alpha
Helix 45
45
C
251 263Right-handed alpha
Helix 46
46
C
274 278Right-handed 310
Helix 47
47
C
294 308Right-handed alpha
Helix 48
48
C
311 316Right-handed 310
Helix 49
49
C
323 341Right-handed alpha
Helix 50
50
C
374 385Right-handed alpha
Helix 51
51
C
390 402Right-handed alpha
Helix 52
52
C
411 421Right-handed alpha
Helix 53
53
D
47 60Right-handed alpha
Helix 54
54
D
65 77Right-handed alpha
Helix 55
55
D
133 147Right-handed alpha
Helix 56
56
D
151 159Right-handed alpha
Helix 57
57
D
163 168Right-handed alpha
Helix 58
58
D
184 187Right-handed 310
Helix 59
59
D
188 205Right-handed alpha
Helix 60
60
D
210 221Right-handed 310
Helix 61
61
D
226 239Right-handed alpha
Helix 62
62
D
241 248Right-handed alpha
Helix 63
63
D
251 263Right-handed alpha
Helix 64
64
D
274 278Right-handed 310
Helix 65
65
D
294 308Right-handed alpha
Helix 66
66
D
311 316Right-handed 310
Helix 67
67
D
323 341Right-handed alpha
Helix 68
68
D
374 385Right-handed alpha
Helix 69
69
D
390 402Right-handed alpha
Helix 70
70
D
411 421Right-handed alpha
Helix 71
71
E
47 60Right-handed alpha
Helix 72
72
E
65 77Right-handed alpha
Helix 73
73
E
133 147Right-handed alpha
Helix 74
74
E
151 159Right-handed alpha
Helix 75
75
E
184 187Right-handed 310
Helix 76
76
E
188 205Right-handed alpha
Helix 77
77
E
210 221Right-handed 310
Helix 78
78
E
226 239Right-handed alpha
Helix 79
79
E
241 248Right-handed alpha
Helix 80
80
E
251 263Right-handed alpha
Helix 81
81
E
274 278Right-handed 310
Helix 82
82
E
294 308Right-handed alpha
Helix 83
83
E
311 316Right-handed 310
Helix 84
84
E
323 341Right-handed alpha
Helix 85
85
E
374 385Right-handed alpha
Helix 86
86
E
390 402Right-handed alpha
Helix 87
87
E
411 421Right-handed alpha
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There are 10 sheets in PDB entry 3PU0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
5 7anti-parallel
Strand 3
C
348 349anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
109 110parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
12 14anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 41first strand
Strand 2
B
109 110parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 349first strand
Strand 2
E
5 7anti-parallel
Strand 3
E
12 14anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 6first strand
Strand 2
C
13 14anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
40 41first strand
Strand 2
C
109 110parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 7first strand
Strand 2
D
12 14anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
40 41first strand
Strand 2
D
109 110parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
40 41first strand
Strand 2
E
109 110parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il